Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference

An overview of MetaMap: historical perspective and recent advances

(2014) Alan R Aronson et al.   JOURNAL OF THE AMERICAN MEDICAL INFORMATICS ASSOCIATION

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text

(2013) Makoto Miwa et al.   BIOINFORMATICS

SemMedDB: a PubMed-scale repository of biomedical semantic predications

(2012) H. Kilicoglu et al.   BIOINFORMATICS

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

(2012) M. Miwa et al.   BIOINFORMATICS

University of Turku in the BioNLP'11 Shared Task

(2012) Jari Björne et al.   BMC BIOINFORMATICS

Biological event composition

(2012) Halil Kilicoglu et al.   BMC BIOINFORMATICS

Combining joint models for biomedical event extraction

(2012) David McClosky et al.   BMC BIOINFORMATICS

A computational framework for gene regulatory network inference that combines multiple methods and datasets

(2011) Rita Gupta et al.   BMC Systems Biology

KEGG for integration and interpretation of large-scale molecular data sets

(2011) M. Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Coreference based event-argument relation extraction on biomedical text

(2011) Katsumasa Yoshikawa et al.   Journal of Biomedical Semantics

Comparison of evolutionary algorithms in gene regulatory network model inference

(2010) Alina Sîrbu et al.   BMC BIOINFORMATICS

Emerging properties of animal gene regulatory networks

(2010) Eric H. Davidson   NATURE

EVENT EXTRACTION WITH COMPLEX EVENT CLASSIFICATION USING RICH FEATURES

(2010) MAKOTO MIWA et al.   Journal of Bioinformatics and Computational Biology

Literature-based priors for gene regulatory networks

(2009) E. Steele et al.   BIOINFORMATICS

BIK, the founding member of the BH3-only family proteins: mechanisms of cell death and role in cancer and pathogenic processes

(2009) G Chinnadurai et al.   ONCOGENE

Deciphering complex mechanisms in neurodegenerative diseases: the advent of systems biology

(2009) Farshid Noorbakhsh et al.   TRENDS IN NEUROSCIENCES

Gene regulatory network inference: Data integration in dynamic models—A review

(2008) Michael Hecker et al.   BIOSYSTEMS

Corpus annotation for mining biomedical events from literature

(2008) Jin-Dong Kim et al.   BMC BIOINFORMATICS

Lessons from a gene regulatory network: echinoderm skeletogenesis provides insights into evolution, plasticity and morphogenesis

(2008) C. A. Ettensohn   DEVELOPMENT

Modelling and analysis of gene regulatory networks

(2008) Guy Karlebach et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

NCBI GEO: archive for high-throughput functional genomic data

(2008) T. Barrett et al.   NUCLEIC ACIDS RESEARCH