A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution

(2012) M. Miwa et al.   BIOINFORMATICS

BioPAX support in CellDesigner

(2011) Huaiyu Mi et al.   BIOINFORMATICS

Discovering and visualizing indirect associations between biomedical concepts

(2011) Y. Tsuruoka et al.   BIOINFORMATICS

Controlled vocabularies and semantics in systems biology

(2011) M. Courtot et al.   Molecular Systems Biology

PubMed and beyond: a survey of web tools for searching biomedical literature

(2011) Z. Lu   Database-The Journal of Biological Databases and Curation

Federated Search

(2011) Milad Shokouhi et al.   Foundations and Trends in Information Retrieval

Building a high-quality sense inventory for improved abbreviation disambiguation

(2010) N. Okazaki et al.   BIOINFORMATICS

PathText: a text mining integrator for biological pathway visualizations

(2010) B. Kemper et al.   BIOINFORMATICS

Disambiguating the species of biomedical named entities using natural language parsers

(2010) X. Wang et al.   BIOINFORMATICS

Cytoscape 2.8: new features for data integration and network visualization

(2010) M. E. Smoot et al.   BIOINFORMATICS

BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models

(2010) Chen Li et al.   BMC Systems Biology

Reconstruction annotation jamborees: a community approach to systems biology

(2010) Ines Thiele et al.   Molecular Systems Biology

The BioPAX community standard for pathway data sharing

(2010) Emek Demir et al.   NATURE BIOTECHNOLOGY

Event extraction for systems biology by text mining the literature

(2010) Sophia Ananiadou et al.   TRENDS IN BIOTECHNOLOGY

Robust result merging using sample-based score estimates

(2009) Milad Shokouhi et al.   ACM TRANSACTIONS ON INFORMATION SYSTEMS

PathBinder – text empirics and automatic extraction of biomolecular interactions

(2009) Lifeng Zhang et al.   BMC BIOINFORMATICS

How to make the most of NE dictionaries in statistical NER

(2008) Yutaka Sasaki et al.   BMC BIOINFORMATICS

Corpus annotation for mining biomedical events from literature

(2008) Jin-Dong Kim et al.   BMC BIOINFORMATICS

Feature Forest Models for Probabilistic HPSG Parsing

(2008) Yusuke Miyao et al.   COMPUTATIONAL LINGUISTICS

A consensus yeast metabolic network reconstruction obtained from a community approach to systems biology

(2008) Markus J Herrgård et al.   NATURE BIOTECHNOLOGY