A computational framework for gene regulatory network inference that combines multiple methods and datasets

Improved Reconstruction of In Silico Gene Regulatory Networks by Integrating Knockout and Perturbation Data

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Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

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Revealing strengths and weaknesses of methods for gene network inference

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Inferring Drosophila gap gene regulatory network: a parameter sensitivity and perturbation analysis

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Nrf2: friend or foe for chemoprevention?

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Generating Realistic In Silico Gene Networks for Performance Assessment of Reverse Engineering Methods

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Inference of biochemical network models in S-system using multiobjective optimization approach

(2008) Pang-Kai Liu et al.   BIOINFORMATICS

Statistical inference of transcriptional module-based gene networks from time course gene expression profiles by using state space models

(2008) Osamu Hirose et al.   BIOINFORMATICS

Gene regulatory network inference: Data integration in dynamic models—A review

(2008) Michael Hecker et al.   BIOSYSTEMS