Clinical metagenomics of bone and joint infections: a proof of concept study
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Title
Clinical metagenomics of bone and joint infections: a proof of concept study
Authors
Keywords
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Journal
Scientific Reports
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-08-04
DOI
10.1038/s41598-017-07546-5
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Note: Only part of the references are listed.- Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
- (2016) K. Schmidt et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Interconnected microbiomes and resistomes in low-income human habitats
- (2016) Erica C. Pehrsson et al. NATURE
- Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy-induced neutropenia
- (2016) P. Gyarmati et al. Scientific Reports
- WGS accurately predicts antimicrobial resistance inEscherichia coli
- (2015) Gregory H. Tyson et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- MetaPhlAn2 for enhanced metagenomic taxonomic profiling
- (2015) Duy Tin Truong et al. NATURE METHODS
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- Next-Generation Sequencing for Diagnosis and Tailored Therapy: A Case Report of Astrovirus-Associated Progressive Encephalitis
- (2015) M.-L. Frémond et al. Journal of the Pediatric Infectious Diseases Society
- The Resistome of Pseudomonas aeruginosa in Relationship to Phenotypic Susceptibility
- (2014) Veronica N. Kos et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses
- (2014) Susannah J Salter et al. BMC BIOLOGY
- Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing
- (2014) N. C. Gordon et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Actionable Diagnosis of Neuroleptospirosis by Next-Generation Sequencing
- (2014) Michael R. Wilson et al. NEW ENGLAND JOURNAL OF MEDICINE
- Challenges in the culture-independent analysis of oral and respiratory samples from intubated patients
- (2014) Vladimir Lazarevic et al. Frontiers in Cellular and Infection Microbiology
- Kraken: ultrafast metagenomic sequence classification using exact alignments
- (2014) Derrick E Wood et al. GENOME BIOLOGY
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data
- (2013) N. Stoesser et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples
- (2013) H. Hasman et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Whole-Genome Sequencing for Rapid Susceptibility Testing of M. tuberculosis
- (2013) Claudio U. Köser et al. NEW ENGLAND JOURNAL OF MEDICINE
- Comparison of DNA Extraction Methods in Analysis of Salivary Bacterial Communities
- (2013) Vladimir Lazarevic et al. PLoS One
- Pediatric Fecal Microbiota Harbor Diverse and Novel Antibiotic Resistance Genes
- (2013) Aimée M. Moore et al. PLoS One
- Using Tablet for visual exploration of second-generation sequencing data
- (2012) I. Milne et al. BRIEFINGS IN BIOINFORMATICS
- Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Bone and joint infections in hospitalized patients in France, 2008: clinical and economic outcomes
- (2012) L. Grammatico-Guillon et al. JOURNAL OF HOSPITAL INFECTION
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak
- (2012) Claudio U. Köser et al. NEW ENGLAND JOURNAL OF MEDICINE
- Comparison of DNA Extraction Methods for Microbial Community Profiling with an Application to Pediatric Bronchoalveolar Lavage Samples
- (2012) Dana Willner et al. PLoS One
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Functional Characterization of the Antibiotic Resistance Reservoir in the Human Microflora
- (2009) M. O. A. Sommer et al. SCIENCE
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