Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity

(2016) Rita Pancsa et al.   BIOPHYSICAL JOURNAL

Introduction to Protein Ensembles and Allostery

(2016) Ruth Nussinov   CHEMICAL REVIEWS

Cytochromecfolds through foldon-dependent native-like intermediates in an ordered pathway

(2016) Wenbing Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system

(2016) Mainak Guharoy et al.   Nature Communications

Start2Fold: a database of hydrogen/deuterium exchange data on protein folding and stability

(2015) Rita Pancsa et al.   NUCLEIC ACIDS RESEARCH

Topological and sequence information predict that foldons organize a partially overlapped and hierarchical structure

(2015) Masatake Sugita et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Classification of Intrinsically Disordered Regions and Proteins

(2014) Robin van der Lee et al.   CHEMICAL REVIEWS

Assessing the accuracy of physical models used in protein-folding simulations: quantitative evidence from long molecular dynamics simulations

(2014) Stefano Piana et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Folding of an intrinsically disordered protein by phosphorylation as a regulatory switch

(2014) Alaji Bah et al.   NATURE

The DynaMine webserver: predicting protein dynamics from sequence

(2014) Elisa Cilia et al.   NUCLEIC ACIDS RESEARCH

The nature of protein folding pathways

(2014) S. Walter Englander et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Improved Contact Predictions Using the Recognition of Protein Like Contact Patterns

(2014) Marcin J. Skwark et al.   PLoS Computational Biology

A novel web server predicts amino acid residue protection against hydrogen–deuterium exchange

(2013) Mikhail Yu. Lobanov et al.   BIOINFORMATICS

A Simple Method to Measure Protein Side-Chain Mobility Using NMR Chemical Shifts

(2013) Mark V. Berjanskii et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Chaperone machines for protein folding, unfolding and disaggregation

(2013) Helen Saibil   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Folding of a large protein at high structural resolution

(2013) B. T. Walters et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stepwise protein folding at near amino acid resolution by hydrogen exchange and mass spectrometry

(2013) W. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From protein sequence to dynamics and disorder with DynaMine

(2013) Elisa Cilia et al.   Nature Communications

Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts

(2012) Carlo Camilloni et al.   BIOCHEMISTRY

Dynamics and mechanisms of coupled protein folding and binding reactions

(2012) Thomas Kiefhaber et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

PSICOV: precise structural contact prediction using sparse inverse covariance estimation on large multiple sequence alignments

(2011) David T. Jones et al.   BIOINFORMATICS

Consequences of Stabilizing the Natively Disordered F Helix for the Folding Pathway of Apomyoglobin

(2011) Chiaki Nishimura et al.   JOURNAL OF MOLECULAR BIOLOGY

How Fast-Folding Proteins Fold

(2011) K. Lindorff-Larsen et al.   SCIENCE

The protein folding transition state: Insights from kinetics and thermodynamics

(2010) Rui D. M. Travasso et al.   JOURNAL OF CHEMICAL PHYSICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Role of Intrinsic Flexibility in Signal Transduction Mediated by the Cell Cycle Regulator, p27Kip1

(2008) Charles A. Galea et al.   JOURNAL OF MOLECULAR BIOLOGY

Hierarchical folding mechanism of apomyoglobin revealed by ultra-fast H/D exchange coupled with 2D NMR

(2008) T. Uzawa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predicting protein folding rates from geometric contact and amino acid sequence

(2008) Zheng Ouyang et al.   PROTEIN SCIENCE

The origins of asymmetry in the folding transition states of protein L and protein G

(2002) John Karanicolas et al.   PROTEIN SCIENCE