Topological and sequence information predict that foldons organize a partially overlapped and hierarchical structure

Imprints of function on the folding landscape: functional role for an intermediate in a conserved eukaryotic binding protein

(2015) Sneha Munshi et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Effects of desolvation barriers and sidechains on local–nonlocal coupling and chevron behaviors in coarse-grained models of protein folding

(2014) Tao Chen et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Energetically significant networks of coupled interactions within an unfolded protein

(2014) J.-H. Cho et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence analysis on the information of folding initiation segments in ferredoxin-like fold proteins

(2014) Masanari Matsuoka et al.   BMC STRUCTURAL BIOLOGY

Stepwise protein folding at near amino acid resolution by hydrogen exchange and mass spectrometry

(2013) W. Hu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Incorporating into a Cα Go model the effects of geometrical restriction on Cα atoms caused by side chain orientations

(2013) Masatake Sugita et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Analyses of the folding properties of ferredoxin-like fold proteins by means of a coarse-grained Gō model: Relationship between the free energy profiles and folding cores

(2013) Masatake Sugita et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Early Folding Events Protect Aggregation-Prone Regions of a β-Rich Protein

(2013) Ivan L. Budyak et al.   STRUCTURE

Early Turn Formation and Chain Collapse Drive Fast Folding of the Major Cold Shock Protein CspA of Escherichia coli

(2012) Dung M. Vu et al.   BIOCHEMISTRY

Microsecond Folding Dynamics of Apomyoglobin at Acidic pH

(2012) Ming Xu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Theory of the Molecular Transfer Model for Proteins with Applications to the Folding of the src-SH3 Domain

(2012) Zhenxing Liu et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Analyses of Protein Sequences Using Inter-Residue Average Distance Statistics to Study Folding Processes and the Significance of Their Partial Sequences

(2012) Yosuke Kawai et al.   PROTEIN AND PEPTIDE LETTERS

Cooperativity, Local-Nonlocal Coupling, and Nonnative Interactions: Principles of Protein Folding from Coarse-Grained Models

(2011) Hue Sun Chan et al.   Annual Review of Physical Chemistry

Consequences of Stabilizing the Natively Disordered F Helix for the Folding Pathway of Apomyoglobin

(2011) Chiaki Nishimura et al.   JOURNAL OF MOLECULAR BIOLOGY

Conformational Properties of the Unfolded State of Im7 in Nondenaturing Conditions

(2011) Clare L. Pashley et al.   JOURNAL OF MOLECULAR BIOLOGY

Collapse kinetics and chevron plots from simulations of denaturant-dependent folding of globular proteins

(2011) Z. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Energetic Frustration of Apomyoglobin Folding: Role of the B Helix

(2010) Chiaki Nishimura et al.   JOURNAL OF MOLECULAR BIOLOGY

Native Topology of the Designed Protein Top7 is Not Conducive to Cooperative Folding

(2009) Zhuqing Zhang et al.   BIOPHYSICAL JOURNAL

Insights from Coarse-Grained Gō Models for Protein Folding and Dynamics

(2009) Ronald Hills et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The Folding Trajectory of RNase H Is Dominated by Its Topology and Not Local Stability: A Protein Engineering Study of Variants that Fold via Two-State and Three-State Mechanisms

(2009) Katelyn B. Connell et al.   JOURNAL OF MOLECULAR BIOLOGY

Theory for Protein Folding Cooperativity: Helix Bundles

(2009) Kingshuk Ghosh et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Selection of Optimal Variants of Gō-Like Models of Proteins through Studies of Stretching

(2008) Joanna I. Sułkowska et al.   BIOPHYSICAL JOURNAL

Changes of Protein Folding Pathways by Circular Permutation

(2008) Ellinor Haglund et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Theoretical and experimental demonstration of the importance of specific nonnative interactions in protein folding

(2008) A. Zarrine-Afsar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparison of the folding mechanism of highly homologous proteins in the lipid-binding protein family

(2008) Ira J. Ropson et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

The origins of asymmetry in the folding transition states of protein L and protein G

(2002) John Karanicolas et al.   PROTEIN SCIENCE