Deciphering biodiversity and interactions between bacteria and microeukaryotes within epilithic biofilms from the Loue River, France

Microbial community diversity and composition varies with habitat characteristics and biofilm function in macrophyte-rich streams

(2016) Peter S. Levi et al.   OIKOS

Application of a spectrofluorimetric tool (bbe BenthoTorch) for monitoring potentially toxic benthic cyanobacteria in rivers

(2016) Isidora Echenique-Subiabre et al.   WATER RESEARCH

Environmental Monitoring: Inferring the Diatom Index from Next-Generation Sequencing Data

(2015) Joana Amorim Visco et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Biodiversity, community structure and function of biofilms in stream ecosystems

(2015) Katharina Besemer   RESEARCH IN MICROBIOLOGY

Quality of dissolved organic matter affects planktonic but not biofilm bacterial production in streams

(2015) Norbert Kamjunke et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Successional Change in Microbial Communities of Benthic Phormidium-Dominated Biofilms

(2014) Katie A. Brasell et al.   MICROBIAL ECOLOGY

Wastewater Treatment Effluent Reduces the Abundance and Diversity of Benthic Bacterial Communities in Urban and Suburban Rivers

(2013) Bradley Drury et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development and comparison of stream indices of biotic integrity using diatoms vs. non-diatom algae vs. a combination

(2013) A. Elizabeth Fetscher et al.   JOURNAL OF APPLIED PHYCOLOGY

The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses

(2013) Tomáš Větrovský et al.   PLoS One

Phylogenetic Affiliation of SSU rRNA Genes Generated by Massively Parallel Sequencing: New Insights into the Freshwater Protist Diversity

(2013) Najwa Taib et al.   PLoS One

Headwaters are critical reservoirs of microbial diversity for fluvial networks

(2013) K. Besemer et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Extremely High Copy Numbers and Polymorphisms of the rDNA Operon Estimated from Single Cell Analysis of Oligotrich and Peritrich Ciliates

(2013) Jun Gong et al.   PROTIST

Pyrosequencing assessment of prokaryotic and eukaryotic diversity in biofilm communities from a French river

(2013) Geneviève Bricheux et al.   MicrobiologyOpen

Short-term dynamics of diversity patterns: evidence of continual reassembly within lacustrine small eukaryotes

(2012) Jean-François Mangot et al.   ENVIRONMENTAL MICROBIOLOGY

Benthic bacterial diversity from freshwater tufas of the Iberian Range (Spain)

(2012) Hugo Beraldi-Campesi et al.   FEMS MICROBIOLOGY ECOLOGY

Unraveling assembly of stream biofilm communities

(2012) Katharina Besemer et al.   ISME Journal

Phylogenetic conservatism of functional traits in microorganisms

(2012) Adam C Martiny et al.   ISME Journal

The Revised Classification of Eukaryotes

(2012) Sina M. Adl et al.   JOURNAL OF EUKARYOTIC MICROBIOLOGY

Inferring Correlation Networks from Genomic Survey Data

(2012) Jonathan Friedman et al.   PLoS Computational Biology

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales

(2011) Danilo Pérez-Pantoja et al.   ENVIRONMENTAL MICROBIOLOGY

Tracking the autochthonous carbon transfer in stream biofilm food webs

(2011) Ute Risse-Buhl et al.   FEMS MICROBIOLOGY ECOLOGY

Plastid 16S rRNA Gene Diversity among Eukaryotic Picophytoplankton Sorted by Flow Cytometry from the South Pacific Ocean

(2011) Xiao Li Shi et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

PANGEA: pipeline for analysis of next generation amplicons

(2010) Adriana Giongo et al.   ISME Journal

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Defining DNA-Based Operational Taxonomic Units for Microbial-Eukaryote Ecology

(2009) D. A. Caron et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Partitioning the turnover and nestedness components of beta diversity

(2009) Andrés Baselga   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Quantification of Diatom and Dinoflagellate Biomasses in Coastal Marine Seawater Samples by Real-Time PCR

(2008) A. Godhe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial and temporal variability in epilithic biofilm bacterial communities along an upland river gradient

(2008) Mary J. Anderson-Glenna et al.   FEMS MICROBIOLOGY ECOLOGY