- Home
- Publications
- Publication Search
- Publication Details
Title
Conformational Heterogeneity of the HIV Envelope Glycan Shield
Authors
Keywords
-
Journal
Scientific Reports
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-06-26
DOI
10.1038/s41598-017-04532-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Nuclear Magnetic Resonance and Molecular Dynamics Simulation of the Interaction between Recognition Protein H7 of the Novel Influenza Virus H7N9 and Glycan Cell Surface Receptors
- (2016) Eleonora Macchi et al. BIOCHEMISTRY
- Trimeric HIV-1-Env Structures Define Glycan Shields from Clades A, B, and G
- (2016) Guillaume B.E. Stewart-Jones et al. CELL
- A Highly Conserved gp120 Inner Domain Residue Modulates Env Conformation and Trimer Stability
- (2016) Shilei Ding et al. JOURNAL OF VIROLOGY
- Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site
- (2016) Harry B Gristick et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Delineating the conformational flexibility of trisaccharides from NMR spectroscopy experiments and computer simulations
- (2016) Mingjun Yang et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Cryo-EM structure of a CD4-bound open HIV-1 envelope trimer reveals structural rearrangements of the gp120 V1V2 loop
- (2016) Haoqing Wang et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cryo-EM structure of a native, fully glycosylated, cleaved HIV-1 envelope trimer
- (2016) J. H. Lee et al. SCIENCE
- Fusion peptide of HIV-1 as a site of vulnerability to neutralizing antibody
- (2016) R. Kong et al. SCIENCE
- Uncleaved prefusion-optimized gp140 trimers derived from analysis of HIV-1 envelope metastability
- (2016) Leopold Kong et al. Nature Communications
- Natively glycosylated HIV-1 Env structure reveals new mode for antibody recognition of the CD4-binding site
- (2016) Harry B Gristick et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Holes in the Glycan Shield of the Native HIV Envelope Are a Target of Trimer-Elicited Neutralizing Antibodies
- (2016) Laura E. McCoy et al. Cell Reports
- Minimally Mutated HIV-1 Broadly Neutralizing Antibodies to Guide Reductionist Vaccine Design
- (2016) Joseph G. Jardine et al. PLoS Pathogens
- Broadly Neutralizing Antibody 8ANC195 Recognizes Closed and Open States of HIV-1 Env
- (2015) Louise Scharf et al. CELL
- Enhanced Conformational Sampling Using Replica Exchange with Concurrent Solute Scaling and Hamiltonian Biasing Realized in One Dimension
- (2015) Mingjun Yang et al. Journal of Chemical Theory and Computation
- Conformational Sampling of Oligosaccharides Using Hamiltonian Replica Exchange with Two-Dimensional Dihedral Biasing Potentials and the Weighted Histogram Analysis Method (WHAM)
- (2015) Mingjun Yang et al. Journal of Chemical Theory and Computation
- CHARMM Drude Polarizable Force Field for Aldopentofuranoses and Methyl-aldopentofuranosides
- (2015) Madhurima Jana et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Model Building and Refinement of a Natively Glycosylated HIV-1 Env Protein by High-Resolution Cryoelectron Microscopy
- (2015) Jeong Hyun Lee et al. STRUCTURE
- Structural Evolution of Glycan Recognition by a Family of Potent HIV Antibodies
- (2014) Fernando Garces et al. CELL
- Accelerate Sampling in Atomistic Energy Landscapes Using Topology-Based Coarse-Grained Models
- (2014) Weihong Zhang et al. Journal of Chemical Theory and Computation
- Polarizable Empirical Force Field for Hexopyranose Monosaccharides Based on the Classical Drude Oscillator
- (2014) Dhilon S. Patel et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Structure and immune recognition of trimeric pre-fusion HIV-1 Env
- (2014) Marie Pancera et al. NATURE
- Recent strategies targeting HIV glycans in vaccine design
- (2014) Satoru Horiya et al. Nature Chemical Biology
- Enhanced conformational sampling of carbohydrates by Hamiltonian replica-exchange simulation
- (2013) Sushil Kumar Mishra et al. GLYCOBIOLOGY
- Multidimensional umbrella sampling and replica-exchange molecular dynamics simulations for structure prediction of transmembrane helix dimers
- (2013) Pai-Chi Li et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- CHARMM36 all-atom additive protein force field: Validation based on comparison to NMR data
- (2013) Jing Huang et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- HIV: Roadmaps to a vaccine
- (2013) Hugo Mouquet et al. NATURE
- Synthetic glycopeptides reveal the glycan specificity of HIV-neutralizing antibodies
- (2013) Mohammed N Amin et al. Nature Chemical Biology
- Prefusion structure of trimeric HIV-1 envelope glycoprotein determined by cryo-electron microscopy
- (2013) Alberto Bartesaghi et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Structural basis for diverse N-glycan recognition by HIV-1–neutralizing V1–V2–directed antibody PG16
- (2013) Marie Pancera et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Supersite of immune vulnerability on the glycosylated face of HIV-1 envelope glycoprotein gp120
- (2013) Leopold Kong et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- The Influence of N-Linked Glycans on the Molecular Dynamics of the HIV-1 gp120 V3 Loop
- (2013) Natasha T. Wood et al. PLoS One
- Structure-Based Design of a Fusion Glycoprotein Vaccine for Respiratory Syncytial Virus
- (2013) J. S. McLellan et al. SCIENCE
- Crystal Structure of a Soluble Cleaved HIV-1 Envelope Trimer
- (2013) J.-P. Julien et al. SCIENCE
- Restricted N-glycan Conformational Space in the PDB and Its Implication in Glycan Structure Modeling
- (2013) Sunhwan Jo et al. PLoS Computational Biology
- Two Dimensional Window Exchange Umbrella Sampling for Transmembrane Helix Assembly
- (2012) Soohyung Park et al. Journal of Chemical Theory and Computation
- OpenMM 4: A Reusable, Extensible, Hardware Independent Library for High Performance Molecular Simulation
- (2012) Peter Eastman et al. Journal of Chemical Theory and Computation
- Optimization of the Additive CHARMM All-Atom Protein Force Field Targeting Improved Sampling of the Backbone ϕ, ψ and Side-Chain χ1 and χ2 Dihedral Angles
- (2012) Robert B. Best et al. Journal of Chemical Theory and Computation
- Effect of Bisecting GlcNAc and Core Fucosylation on Conformational Properties of Biantennary Complex-Type N-Glycans in Solution
- (2012) Wataru Nishima et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Transmembrane Helix Assembly by Window Exchange Umbrella Sampling
- (2012) Soohyung Park et al. PHYSICAL REVIEW LETTERS
- Are Long-Range Structural Correlations Behind the Aggregration Phenomena of Polyglutamine Diseases?
- (2012) Mahmoud Moradi et al. PLoS Computational Biology
- Structural Diversity and Changes in Conformational Equilibria of Biantennary Complex-Type N-Glycans in Water Revealed by Replica-Exchange Molecular Dynamics Simulation
- (2011) Suyong Re et al. BIOPHYSICAL JOURNAL
- CHARMM Additive All-Atom Force Field for Carbohydrate Derivatives and Its Utility in Polysaccharide and Carbohydrate–Protein Modeling
- (2011) Olgun Guvench et al. Journal of Chemical Theory and Computation
- How Hydrophobicity and the Glycosylation Site of Glycans Affect Protein Folding and Stability: A Molecular Dynamics Simulation
- (2011) Diannan Lu et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Replica Exchange with Solute Scaling: A More Efficient Version of Replica Exchange with Solute Tempering (REST2)
- (2011) Lingle Wang et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Structure of HIV-1 gp120 V1/V2 domain with broadly neutralizing antibody PG9
- (2011) Jason S. McLellan et al. NATURE
- CHARMM Additive All-Atom Force Field for Glycosidic Linkages in Carbohydrates Involving Furanoses
- (2010) E. Prabhu Raman et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Molecular dynamics simulation reveals preorganization of the chloroplast FtsY towards complex formation induced by GTP binding
- (2010) Ming-Jun Yang et al. JOURNAL OF STRUCTURAL BIOLOGY
- CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses
- (2009) Olgun Guvench et al. Journal of Chemical Theory and Computation
- CHARMM: The biomolecular simulation program
- (2009) B. R. Brooks et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- CHARMM Additive All-Atom Force Field for Aldopentofuranoses, Methyl-aldopentofuranosides, and Fructofuranose
- (2009) Elizabeth Hatcher et al. JOURNAL OF PHYSICAL CHEMISTRY B
- The role of dynamic conformational ensembles in biomolecular recognition
- (2009) David D Boehr et al. Nature Chemical Biology
- Additive empirical force field for hexopyranose monosaccharides
- (2008) Olgun Guvench et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Molecular architecture of native HIV-1 gp120 trimers
- (2008) Jun Liu et al. NATURE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExplorePublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More