Enhancing gene regulatory network inference through data integration with markov random fields
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Enhancing gene regulatory network inference through data integration with markov random fields
Authors
Keywords
-
Journal
Scientific Reports
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-02-01
DOI
10.1038/srep41174
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Integrative random forest for gene regulatory network inference
- (2015) Francesca Petralia et al. BIOINFORMATICS
- BRANE Cut: biologically-related a priori network enhancement with graph cuts for gene regulatory network inference
- (2015) Aurélie Pirayre et al. BMC BIOINFORMATICS
- AnArabidopsisTranscriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors
- (2015) Jinpu Jin et al. MOLECULAR BIOLOGY AND EVOLUTION
- FlyNet: a versatile network prioritization server for theDrosophilacommunity
- (2015) Junha Shin et al. NUCLEIC ACIDS RESEARCH
- cMonkey2: Automated, systematic, integrated detection of co-regulated gene modules for any organism
- (2015) David J. Reiss et al. NUCLEIC ACIDS RESEARCH
- JASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profiles
- (2015) Anthony Mathelier et al. NUCLEIC ACIDS RESEARCH
- Regulation of Jasmonate-Mediated Stamen Development and Seed Production by a bHLH-MYB Complex in Arabidopsis
- (2015) Tiancong Qi et al. PLANT CELL
- Gene Networks in Plant Biology: Approaches in Reconstruction and Analysis
- (2015) Yupeng Li et al. TRENDS IN PLANT SCIENCE
- Multilayered Organization of Jasmonate Signalling in the Regulation of Root Growth
- (2015) Debora Gasperini et al. PLoS Genetics
- B-GATA transcription factors – insights into their structure, regulation, and role in plant development
- (2015) Carina Behringer et al. Frontiers in Plant Science
- Molecular Control of Cell Specification and Cell Differentiation During Procambial Development
- (2014) Kaori Miyashima Furuta et al. Annual Review of Plant Biology
- Measuring the wisdom of the crowds in network-based gene function inference
- (2014) W. Verleyen et al. BIOINFORMATICS
- Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity
- (2014) Matthew T. Weirauch et al. CELL
- Arabidopsis VIM Proteins Regulate Epigenetic Silencing by Modulating DNA Methylation and Histone Modification in Cooperation with MET1
- (2014) Jeongsik Kim et al. Molecular Plant
- Mutation of the Arabidopsis Calmodulin-Like Protein CML37 Deregulates the Jasmonate Pathway and Enhances Susceptibility to Herbivory
- (2014) Sandra S. Scholz et al. Molecular Plant
- AraNet v2: an improved database of co-functional gene networks for the study of Arabidopsis thaliana and 27 other nonmodel plant species
- (2014) Tak Lee et al. NUCLEIC ACIDS RESEARCH
- Inference of Transcriptional Networks inArabidopsisthrough Conserved Noncoding Sequence Analysis
- (2014) Jan Van de Velde et al. PLANT CELL
- A Generic Tool for Transcription Factor Target Gene Discovery in Arabidopsis Cell Suspension Cultures Based on Tandem Chromatin Affinity Purification
- (2014) A. Verkest et al. PLANT PHYSIOLOGY
- DNA-binding specificities of plant transcription factors and their potential to define target genes
- (2014) José M. Franco-Zorrilla et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Supervised, semi-supervised and unsupervised inference of gene regulatory networks
- (2013) S. R. Maetschke et al. BRIEFINGS IN BIOINFORMATICS
- Transcriptional Regulation and Its Misregulation in Disease
- (2013) Tong Ihn Lee et al. CELL
- Evolution of crop species: genetics of domestication and diversification
- (2013) Rachel S. Meyer et al. NATURE REVIEWS GENETICS
- Towards revealing the functions of all genes in plants
- (2013) Seung Yon Rhee et al. TRENDS IN PLANT SCIENCE
- Integrated Module and Gene-Specific Regulatory Inference Implicates Upstream Signaling Networks
- (2013) Sushmita Roy et al. PLoS Computational Biology
- Inferring gene regulatory networks by ANOVA
- (2012) Robert Küffner et al. BIOINFORMATICS
- Identification of putative cancer genes through data integration and comparative genomics between plants and humans
- (2012) Mauricio Quimbaya et al. CELLULAR AND MOLECULAR LIFE SCIENCES
- Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks
- (2012) D. Marbach et al. GENOME RESEARCH
- MYC2: The Master in Action
- (2012) Kemal Kazan et al. Molecular Plant
- Wisdom of crowds for robust gene network inference
- (2012) Daniel Marbach et al. NATURE METHODS
- Transcription factors: from enhancer binding to developmental control
- (2012) François Spitz et al. NATURE REVIEWS GENETICS
- SUBA3: a database for integrating experimentation and prediction to define the SUBcellular location of proteins in Arabidopsis
- (2012) Sandra K. Tanz et al. NUCLEIC ACIDS RESEARCH
- Manipulation of plant metabolic pathways by transcription factors
- (2011) Akira Iwase et al. Plant Biotechnology
- Auxin-Dependent Cell Cycle Reactivation through Transcriptional Regulation of Arabidopsis E2Fa by Lateral Organ Boundary Proteins
- (2011) B. Berckmans et al. PLANT CELL
- The JAZ Proteins: A Crucial Interface in the Jasmonate Signaling Cascade
- (2011) Laurens Pauwels et al. PLANT CELL
- Transcriptomic Characterization of a Synergistic Genetic Interaction during Carpel Margin Meristem Development in Arabidopsis thaliana
- (2011) April N. Wynn et al. PLoS One
- Genome-wide transcription factor binding: beyond direct target regulation
- (2011) Kyle L. MacQuarrie et al. TRENDS IN GENETICS
- Revealing strengths and weaknesses of methods for gene network inference
- (2010) D. Marbach et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The MCM-Binding Protein ETG1 Aids Sister Chromatid Cohesion Required for Postreplicative Homologous Recombination Repair
- (2010) Naoki Takahashi et al. PLoS Genetics
- The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis
- (2009) Rosangela Sozzani et al. PLANT MOLECULAR BIOLOGY
- AINTEGUMENTA and AINTEGUMENTA-LIKE6 Act Redundantly to Regulate Arabidopsis Floral Growth and Patterning
- (2009) BethA. Krizek PLANT PHYSIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started