Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches

Phylogenetic congruence of parasitic smut fungi (Anthracoidea, Anthracoideaceae) and their host plants (Carex, Cyperaceae): Cospeciation or host-shift speciation?

(2015) M. Escudero   AMERICAN JOURNAL OF BOTANY

High-stakes species delimitation in eyeless cave spiders (Cicurina,Dictynidae, Araneae) from central Texas

(2015) Marshal Hedin   MOLECULAR ECOLOGY

Host jumps shaped the diversity of extant rust fungi (Pucciniales)

(2015) Alistair R. McTaggart et al.   NEW PHYTOLOGIST

Multigene phylogeny and taxonomic revision of yeasts and related fungi in the Ustilaginomycotina

(2015) Q.-M. Wang et al.   STUDIES IN MYCOLOGY

HOST SWITCHING PROMOTES DIVERSITY IN HOST-SPECIALIZED MYCOPARASITIC FUNGI: UNCOUPLED EVOLUTION IN THEBIATOROPSIS-USNEASYSTEM

(2014) Ana M. Millanes et al.   EVOLUTION

Phylogeny of Nassella (Stipeae, Pooideae, Poaceae) Based on Analyses of Chloroplast and Nuclear Ribosomal DNA and Morphology

(2014) Ana M. Cialdella et al.   SYSTEMATIC BOTANY

A general species delimitation method with applications to phylogenetic placements

(2013) Jiajie Zhang et al.   BIOINFORMATICS

Typification and phylogenetic study of Phyllosticta ampelicida and P. vaccinii

(2013) Ke Zhang et al.   MYCOLOGIA

Soral synapomorphies are significant for the systematics of the Ustilago-Sporisorium-Macalpinomyces complex (Ustilaginaceae)

(2013) A. R. McTaggart et al.   PERSOONIA

Taxonomic revision of Ustilago, Sporisorium and Macalpinomyces

(2013) A.R. McTaggart et al.   PERSOONIA

A review of the Ustilago-Sporisorium-Macalpinomyces complex

(2013) A.R. McTaggart et al.   PERSOONIA

Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

(2013) Tomochika Fujisawa et al.   SYSTEMATIC BIOLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

The evolution of species concepts and species recognition criteria in plant pathogenic fungi

(2011) Lei Cai et al.   FUNGAL DIVERSITY

Stipa (Poaceae) and allies in the Old World: molecular phylogenetics realigns genus circumscription and gives evidence on the origin of American and Australian lineages

(2011) Hassan R. Hamasha et al.   PLANT SYSTEMATICS AND EVOLUTION

Jane: a new tool for the cophylogeny reconstruction problem

(2010) Chris Conow et al.   Algorithms for Molecular Biology

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Phylogeny and evolutionary history of Leymus (Triticeae; Poaceae) based on a single-copy nuclear gene encoding plastid acetyl-CoA carboxylase

(2009) Xing Fan et al.   BMC EVOLUTIONARY BIOLOGY

Genetic diversity of Ophiocordyceps sinensis, a medicinal fungus endemic to the Tibetan Plateau: Implications for its evolution and conservation

(2009) Yongjie Zhang et al.   BMC EVOLUTIONARY BIOLOGY

Plant DNA barcodes and a community phylogeny of a tropical forest dynamics plot in Panama

(2009) W. J. Kress et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

(2008) Guislaine Refrégier et al.   BMC EVOLUTIONARY BIOLOGY

Recent developments in the MAFFT multiple sequence alignment program

(2008) K. Katoh et al.   BRIEFINGS IN BIOINFORMATICS

Codivergence in Heteromyid Rodents (Rodentia: Heteromyidae) and Their Sucking Lice of the Genus Fahrenholzia (Phthiraptera: Anoplura)

(2008) Jessica E. Light et al.   SYSTEMATIC BIOLOGY