Identification of two putative reference genes from grapevine suitable for gene expression analysis in berry and related tissues derived from RNA-Seq data

A comparison of statistical methods for detecting differentially expressed genes from RNA-seq data

(2012) Vanessa M. Kvam et al.   AMERICAN JOURNAL OF BOTANY

Identification and characterisation of CYP75A31, a new flavonoid 3'5'-hydroxylase, isolated from Solanum lycopersicum

(2012) Kristine M Olsen et al.   BMC PLANT BIOLOGY

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Identification of genes associated with nitrogen-use efficiency by genome-wide transcriptional analysis of two soybean genotypes

(2011) Qing N Hao et al.   BMC GENOMICS

Identification of reference genes suitable for qRT-PCR in grapevine and application for the study of the expression of genes involved in pterostilbene synthesis

(2011) Magdalena Gamm et al.   MOLECULAR GENETICS AND GENOMICS

Selection and Validation of Reference Genes for Quantitative Real-Time PCR in Buckwheat (Fagopyrum esculentum) Based on Transcriptome Sequence Data

(2011) Natalia V. Demidenko et al.   PLoS One

Differential gene expression in incompatible interaction between wheat and stripe rust fungus revealed by cDNA-AFLP and comparison to compatible interaction

(2010) Xiaojie Wang et al.   BMC PLANT BIOLOGY

Identification and evaluation of new reference genes in Gossypium hirsutum for accurate normalization of real-time quantitative RT-PCR data

(2010) Sinara Artico et al.   BMC PLANT BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

A decade of improvements in quantification of gene expression and internal standard selection

(2009) Olivier Thellin et al.   BIOTECHNOLOGY ADVANCES

Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR

(2009) Ruibo Hu et al.   BMC MOLECULAR BIOLOGY

Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references

(2009) S. Guenin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Strategy of the use of 28S rRNA as a housekeeping gene in real-time quantitative PCR analysis of gene transcription in insect cells infected by viruses

(2009) Jian-Li Xue et al.   JOURNAL OF VIROLOGICAL METHODS

Validation of internal control for gene expression study in soybean by quantitative real-time PCR

(2008) Bo Jian et al.   BMC MOLECULAR BIOLOGY

Exploring valid reference genes for gene expression studies in Brachypodium distachyon by real-time PCR

(2008) Shin-Young Hong et al.   BMC PLANT BIOLOGY

Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

(2008) Marino Expósito-Rodríguez et al.   BMC PLANT BIOLOGY

Molecular characterization and expression analysis of the Rab GTPase family in Vitis vinifera reveal the specific expression of a VvRabA protein

(2008) P. Abbal et al.   JOURNAL OF EXPERIMENTAL BOTANY

Gene expression analyses in individual grape (Vitis vinifera L.) berries during ripening initiation reveal that pigmentation intensity is a valid indicator of developmental staging within the cluster

(2008) Steven T. Lund et al.   PLANT MOLECULAR BIOLOGY