Genome-Wide Identification and Validation of Reference Genes in Infected Tomato Leaves for Quantitative RT-PCR Analyses

Orchestrating high-throughput genomic analysis with Bioconductor

(2015) Wolfgang Huber et al.   NATURE METHODS

Refined Requirements for Protein Regions Important for Activity of the TALE AvrBs3

(2015) Tom Schreiber et al.   PLoS One

Selection and evaluation of novel reference genes for quantitative reverse transcription PCR (qRT-PCR) based on genome and transcriptome data in Brassica napus L.

(2014) Hongli Yang et al.   GENE

Genome-wide identification of housekeeping genes in maize

(2014) Feng Lin et al.   PLANT MOLECULAR BIOLOGY

Screening Suitable Reference Genes for Normalization in Reverse Transcription Quantitative Real-Time PCR Analysis in Melon

(2014) Qiusheng Kong et al.   PLoS One

Assessment of reference gene stability influenced by extremely divergent disease symptoms in Solanum lycopersicum L.

(2013) Przemysław Wieczorek et al.   JOURNAL OF VIROLOGICAL METHODS

Defining reference genes for qPCR normalization to study biotic and abiotic stress responses in Vigna mungo

(2013) Anirban Kundu et al.   PLANT CELL REPORTS

Xanthomonas euvesicatoriatype III effector XopQ interacts with tomato and pepper 14-3-3 isoforms to suppress effector-triggered immunity

(2013) Doron Teper et al.   PLANT JOURNAL

Identification of Reference Genes for Normalizing RNA Expression in Potato Roots Infected with Cyst Nematodes

(2013) Patricio Castro-Quezada et al.   PLANT MOLECULAR BIOLOGY REPORTER

Stability of Expression of Reference Genes Among Different Lentil (Lens culinaris) Genotypes Subjected to Cold Stress, White Mold Disease, and Aphanomyces Root Rot

(2013) Gopesh C. Saha et al.   PLANT MOLECULAR BIOLOGY REPORTER

Comparative RNA-Seq Analysis of Early-Infected Peach Leaves by the Invasive Phytopathogen Xanthomonas arboricola pv. pruni

(2013) Didier Socquet-Juglard et al.   PLoS One

Evaluation of Reference Genes for RT-qPCR Expression Studies in Hop (Humulus lupulus L.) during Infection with Vascular Pathogen Verticillium albo-atrum

(2013) Nataša Štajner et al.   PLoS One

Superior Cross-Species Reference Genes: A Blueberry Case Study

(2013) Jose V. Die et al.   PLoS One

Reference Gene Selection and Validation for the Early Responses to Downy Mildew Infection in Susceptible and Resistant Vitis vinifera Cultivars

(2013) Filipa Monteiro et al.   PLoS One

Xanthomonas oryzae pv oryzae triggers immediate transcriptomic modulations in rice

(2012) Rumdeep K Grewal et al.   BMC GENOMICS

Evaluation of appropriate reference genes for gene expression studies in pepper by quantitative real-time PCR

(2012) Wang Shu Bin et al.   MOLECULAR BREEDING

Identification and testing of reference genes for Sesame gene expression analysis by quantitative real-time PCR

(2012) Libin Wei et al.   PLANTA

Reference Genes for Accurate Transcript Normalization in Citrus Genotypes under Different Experimental Conditions

(2012) Valéria Mafra et al.   PLoS One

Different Transcriptional Response to Xanthomonas citri subsp. citri between Kumquat and Sweet Orange with Contrasting Canker Tolerance

(2012) Xing-Zheng Fu et al.   PLoS One

Evaluation of New Reference Genes in Papaya for Accurate Transcript Normalization under Different Experimental Conditions

(2012) Xiaoyang Zhu et al.   PLoS One

Validation of Reference Genes for Gene Expression Studies in Virus-Infected Nicotiana benthamiana Using Quantitative Real-Time PCR

(2012) Deshui Liu et al.   PLoS One

Tomato TFT1 Is Required for PAMP-Triggered Immunity and Mutations that Prevent T3S Effector XopN from Binding to TFT1 Attenuate Xanthomonas Virulence

(2012) Kyle W. Taylor et al.   PLoS Pathogens

Identification of reference genes for reverse transcription quantitative real-time PCR normalization in pepper (Capsicum annuum L.)

(2011) Hongjian Wan et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization

(2011) Tomas Hruz et al.   BMC GENOMICS

Establishing references for gene expression analyses by RT-qPCR in Theobroma cacao tissues

(2011) T.T. Pinheiro et al.   GENETICS AND MOLECULAR RESEARCH

Reference Gene Selection for Quantitative Real-Time PCR in Chrysanthemum Subjected to Biotic and Abiotic Stress

(2011) Chunsun Gu et al.   MOLECULAR BIOTECHNOLOGY

Identification of reference genes suitable for qRT-PCR in grapevine and application for the study of the expression of genes involved in pterostilbene synthesis

(2011) Magdalena Gamm et al.   MOLECULAR GENETICS AND GENOMICS

Reference Genes for the Normalization of Gene Expression in Eucalyptus Species

(2011) L. A. de Oliveira et al.   PLANT AND CELL PHYSIOLOGY

Identification of Reference Genes for RT–qPCR Expression Analysis in Arabidopsis and Tomato Seeds

(2011) Bas J. W. Dekkers et al.   PLANT AND CELL PHYSIOLOGY

A Guideline to Family-Wide Comparative State-of-the-Art Quantitative RT-PCR Analysis Exemplified with a Brassicaceae Cross-Species Seed Germination Case Study

(2011) Kai Graeber et al.   PLANT CELL

Identification of suitable reference genes for real-time RT-PCR normalization in the grapevine-downy mildew pathosystem

(2011) M. Selim et al.   PLANT CELL REPORTS

Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions

(2011) Lei Chen et al.   PLANTA

Selection and Validation of Reference Genes for Quantitative Real-Time PCR in Buckwheat (Fagopyrum esculentum) Based on Transcriptome Sequence Data

(2011) Natalia V. Demidenko et al.   PLoS One

XanthomonasAvrBs3 Family-Type III Effectors: Discovery and Function

(2010) Jens Boch et al.   Annual Review of Phytopathology

Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets

(2010) Reena Narsai et al.   BMC PLANT BIOLOGY

Validation of reference genes as internal control for studying viral infections in cereals by quantitative real-time RT-PCR

(2010) Jana Jarošová et al.   BMC PLANT BIOLOGY

Differential gene expression in kernels and silks of maize lines with contrasting levels of ear rot resistance after Fusarium verticillioides infection

(2010) Lanubile Alessandra et al.   JOURNAL OF PLANT PHYSIOLOGY

Identification and Validation of Reference Genes for Normalization of Transcripts from Virus-InfectedArabidopsis thaliana

(2010) S. T. Lilly et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Reference Gene Selection for Real-Time Quantitative Polymerase Chain Reaction of mRNA Transcript Levels in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)

(2010) Jiani Qi et al.   PLANT MOLECULAR BIOLOGY REPORTER

Evaluation of candidate reference genes for expression studies in Pisum sativum under different experimental conditions

(2010) José V. Die et al.   PLANTA

Transcriptome analysis of resistant and susceptible genotypes of Glycine tomentella during Phakopsora pachyrhizi infection reveals novel rust resistance genes

(2010) Ruth Elena Soria-Guerra et al.   THEORETICAL AND APPLIED GENETICS

Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress

(2009) Trond Løvdal et al.   ANALYTICAL BIOCHEMISTRY

Normalization of qRT-PCR data: the necessity of adopting a systematic, experimental conditions-specific, validation of references

(2009) S. Guenin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Xanthomonas T3S Effector XopN Suppresses PAMP-Triggered Immunity and Interacts with a Tomato Atypical Receptor-Like Kinase and TFT1

(2009) J.-G. Kim et al.   PLANT CELL

Selection of internal control genes for quantitative real-time RT-PCR studies during tomato development process

(2008) Marino Expósito-Rodríguez et al.   BMC PLANT BIOLOGY

Functional Characterization of the Type III Secretion ATPase HrcN from the Plant Pathogen Xanthomonas campestris pv. vesicatoria

(2008) C. Lorenz et al.   JOURNAL OF BACTERIOLOGY

Towards a Systematic Validation of References in Real-Time RT-PCR

(2008) L. Gutierrez et al.   PLANT CELL