Diversity analysis of sulfite- and sulfate-reducing microorganisms by multiplex dsrA and dsrB amplicon sequencing using new primers and mock community-optimized bioinformatics

Phasing amplicon sequencing on Illumina Miseq for robust environmental microbial community analysis

(2015) Liyou Wu et al.   BMC MICROBIOLOGY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Sequencing and beyond: integrating molecular 'omics' for microbial community profiling

(2015) Eric A. Franzosa et al.   NATURE REVIEWS MICROBIOLOGY

Accurate multiplexing and filtering for high-throughput amplicon-sequencing

(2015) Philippe Esling et al.   NUCLEIC ACIDS RESEARCH

A flexible and economical barcoding approach for highly multiplexed amplicon sequencing of diverse target genes

(2015) Craig W. Herbold et al.   Frontiers in Microbiology

Formate, acetate, and propionate as substrates for sulfate reduction in sub-arctic sediments of Southwest Greenland

(2015) Clemens Glombitza et al.   Frontiers in Microbiology

Primer and platform effects on 16S rRNA tag sequencing

(2015) Julien Tremblay et al.   Frontiers in Microbiology

The “bacterial heterodisulfide” DsrC is a key protein in dissimilatory sulfur metabolism

(2014) S.S. Venceslau et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Temperature response of denitrification and anaerobic ammonium oxidation rates and microbial community structure in Arctic fjord sediments

(2014) Andy Canion et al.   ENVIRONMENTAL MICROBIOLOGY

nifHpyrosequencing reveals the potential for location-specific soil chemistry to influence N2-fixing community dynamics

(2014) Mónica M. Collavino et al.   ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and environmental diversity of DsrAB-type dissimilatory (bi)sulfite reductases

(2014) Albert Leopold Müller et al.   ISME Journal

Analysis, Optimization and Verification of Illumina-Generated 16S rRNA Gene Amplicon Surveys

(2014) Michael C. Nelson et al.   PLoS One

NxrBencoding the beta subunit of nitrite oxidoreductase as functional and phylogenetic marker for nitrite-oxidizingNitrospira

(2013) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Endospores of thermophilic bacteria as tracers of microbial dispersal by ocean currents

(2013) Albert Leopold Müller et al.   ISME Journal

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt

(2013) M. A. Lever et al.   SCIENCE

Effects of Spartina alterniflora invasion on the communities of methanogens and sulfate-reducing bacteria in estuarine marsh sediments

(2013) Jemaneh Zeleke et al.   Frontiers in Microbiology

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

Complete Genome Sequences of Desulfosporosinus orientis DSM765T, Desulfosporosinus youngiae DSM17734T, Desulfosporosinus meridiei DSM13257T, and Desulfosporosinus acidiphilus DSM22704T

(2012) M. Pester et al.   JOURNAL OF BACTERIOLOGY

Zero-valent sulphur is a key intermediate in marine methane oxidation

(2012) Jana Milucka et al.   NATURE

Sulfate-reducing microorganisms in wetlands – fameless actors in carbon cycling and climate change

(2012) Michael Pester   Frontiers in Microbiology

Microbial pathways in colonic sulfur metabolism and links with health and disease

(2012) Franck Carbonero et al.   Frontiers in Physiology

amoA-based consensus phylogeny of ammonia-oxidizing archaea and deep sequencing of amoA genes from soils of four different geographic regions

(2011) Michael Pester et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of Deglaciation on Microbial Communities in Marine Sediments Off the Coast of Svalbard, Arctic Circle

(2011) Soo-Je Park et al.   MICROBIAL ECOLOGY

Performance, Accuracy, and Web Server for Evolutionary Placement of Short Sequence Reads under Maximum Likelihood

(2011) Simon A. Berger et al.   SYSTEMATIC BIOLOGY

Ultra-deep pyrosequencing of pmoA amplicons confirms the prevalence of Methylomonas and Methylocystis in Sphagnum mosses from a Dutch peat bog

(2011) Nardy Kip et al.   Environmental Microbiology Reports

Microorganisms with Novel Dissimilatory (Bi)Sulfite Reductase Genes Are Widespread and Part of the Core Microbiota in Low-Sulfate Peatlands

(2010) Doris Steger et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diversity of Dissimilatory Sulfite Reductase Genes (dsrAB) in a Salt Marsh Impacted by Long-Term Acid Mine Drainage

(2010) J. W. Moreau et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

A ‘rare biosphere’ microorganism contributes to sulfate reduction in a peatland

(2010) Michael Pester et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The 'rare biosphere': a reality check

(2009) Jens Reeder et al.   NATURE METHODS

Reverse dissimilatory sulfite reductase as phylogenetic marker for a subgroup of sulfur-oxidizing prokaryotes

(2008) Alexander Loy et al.   ENVIRONMENTAL MICROBIOLOGY

Microbiological disproportionation of inorganic sulfur compounds

(2008) Kai Finster   Journal of Sulfur Chemistry