Structural analysis of an oxygen-regulated diguanylate cyclase

Oligomeric state affects oxygen dissociation and diguanylate cyclase activity of globin coupled sensors

(2014) Justin L. Burns et al.   Molecular BioSystems

Deciphering key features in protein structures with the new ENDscript server

(2014) Xavier Robert et al.   NUCLEIC ACIDS RESEARCH

Structure of a Diguanylate Cyclase from Thermotoga maritima: Insights into Activation, Feedback Inhibition and Thermostability

(2014) Angeline Deepthi et al.   PLoS One

ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

(2013) Gershon Celniker et al.   ISRAEL JOURNAL OF CHEMISTRY

Heme-based Globin-coupled Oxygen Sensors: Linking Oxygen Binding to Functional Regulation of Diguanylate Cyclase, Histidine Kinase, and Methyl-accepting Chemotaxis

(2013) Markéta Martínková et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger

(2013) U. Romling et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Scalable web services for the PSIPRED Protein Analysis Workbench

(2013) Daniel W. A. Buchan et al.   NUCLEIC ACIDS RESEARCH

Probing the activity of diguanylate cyclases and c-di-GMP phosphodiesterases in real-time by CD spectroscopy

(2013) Valentina Stelitano et al.   NUCLEIC ACIDS RESEARCH

Investigating the Allosteric Regulation of YfiN from Pseudomonas aeruginosa: Clues from the Structure of the Catalytic Domain

(2013) Giorgio Giardina et al.   PLoS One

How good is automated protein docking?

(2013) Dima Kozakov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Structure and Signaling Mechanism of a Zinc-Sensory Diguanylate Cyclase

(2013) Franziska Zähringer et al.   STRUCTURE

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Second Messenger Regulation of Biofilm Formation: Breakthroughs in Understanding c-di-GMP Effector Systems

(2012) Chelsea D. Boyd et al.   Annual Review of Cell and Developmental Biology

Environmental Heme-Based Sensor Proteins: Implications for Understanding Bacterial Pathogenesis

(2012) Aisha Farhana et al.   ANTIOXIDANTS & REDOX SIGNALING

Nucleotide, c-di-GMP, c-di-AMP, cGMP, cAMP, (p)ppGpp signaling in bacteria and implications in pathogenesis

(2012) Dimpy Kalia et al.   CHEMICAL SOCIETY REVIEWS

‘Life-style’ control networks in Escherichia coli: Signaling by the second messenger c-di-GMP

(2012) Tatyana L. Povolotsky et al.   JOURNAL OF BIOTECHNOLOGY

Stabilizing Additives Added during Cell Lysis Aid in the Solubilization of Recombinant Proteins

(2012) David J. Leibly et al.   PLoS One

Sensing the messenger: The diverse ways that bacteria signal through c-di-GMP

(2012) Petya Violinova Krasteva et al.   PROTEIN SCIENCE

The structure and inhibition of a GGDEF diguanylate cyclase complexed with (c-di-GMP)2at the active site

(2011) Chao-Yu Yang et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Overview of theCCP4 suite and current developments

(2011) Martyn D. Winn et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Protein loop compaction and the origin of the effect of arginine and glutamic acid mixtures on solubility, stability and transient oligomerization of proteins

(2011) Jascha Blobel et al.   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

LigPlot+: Multiple Ligand–Protein Interaction Diagrams for Drug Discovery

(2011) Roman A. Laskowski et al.   Journal of Chemical Information and Modeling

Combining Global and Local Measures for Structure-Based Druggability Predictions

(2011) Andrea Volkamer et al.   Journal of Chemical Information and Modeling

Leu65 in the heme distal side is critical for the stability of the Fe(II)–O2 complex of YddV, a globin-coupled oxygen sensor diguanylate cyclase

(2011) Kyosuke Nakajima et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

Cyclic di-GMP Activation of Polynucleotide Phosphorylase Signal-Dependent RNA Processing

(2011) Jason R. Tuckerman et al.   JOURNAL OF MOLECULAR BIOLOGY

Experimental phasing withSHELXC/D/E: combining chain tracing with density modification

(2010) George M. Sheldrick   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Ligand-Binding PAS Domains in a Genomic, Cellular, and Structural Context

(2010) Jonathan T. Henry et al.   Annual Review of Microbiology

Important Roles of Tyr43 at the Putative Heme Distal Side in the Oxygen Recognition and Stability of the Fe(II)−O2Complex of YddV, a Globin-Coupled Heme-Based Oxygen Sensor Diguanylate Cyclase

(2010) Kenichi Kitanishi et al.   BIOCHEMISTRY

Second Messenger-Mediated Adjustment of Bacterial Swimming Velocity

(2010) Alex Boehm et al.   CELL

TheyddV-dosoperon controls biofilm formation through the regulation of genes encoding curli fibers' subunits in aerobically growingEscherichia coli

(2010) Letizia Tagliabue et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

The diguanylate cyclase YddV controls production of the exopolysaccharide poly-N-acetylglucosamine (PNAG) through regulation of the PNAG biosynthetic pgaABCD operon

(2010) L. Tagliabue et al.   MICROBIOLOGY-SGM

Interplay of heritage and habitat in the distribution of bacterial signal transduction systems

(2010) Michael Y. Galperin et al.   Molecular BioSystems

HexServer: an FFT-based protein docking server powered by graphics processors

(2010) G. Macindoe et al.   NUCLEIC ACIDS RESEARCH

An Oxygen-Sensing Diguanylate Cyclase and Phosphodiesterase Couple for c-di-GMP Control

(2009) Jason R. Tuckerman et al.   BIOCHEMISTRY

Molecular oxygen regulates the enzymatic activity of a heme-containing diguanylate cyclase (HemDGC) for the synthesis of cyclic di-GMP

(2009) Hitomi Sawai et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Size and Shape of Protein Molecules at the Nanometer Level Determined by Sedimentation, Gel Filtration, and Electron Microscopy

(2009) Harold P. Erickson   BIOLOGICAL PROCEDURES ONLINE

Bacterial sensors of oxygen

(2009) Jeffrey Green et al.   CURRENT OPINION IN MICROBIOLOGY

On computational approaches for size-and-shape distributions from sedimentation velocity analytical ultracentrifugation

(2009) Peter Schuck   EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS

Globins Synthesize the Second Messenger Bis-(3′–5′)-Cyclic Diguanosine Monophosphate in Bacteria

(2009) Xuehua Wan et al.   JOURNAL OF MOLECULAR BIOLOGY

Determinants for the Activation and Autoinhibition of the Diguanylate Cyclase Response Regulator WspR

(2009) Nabanita De et al.   JOURNAL OF MOLECULAR BIOLOGY

Gene expression patterns and differential input into curli fimbriae regulation of all GGDEF/EAL domain proteins in Escherichia coli

(2009) N. Sommerfeldt et al.   MICROBIOLOGY-SGM

Structural and mechanistic determinants of c-di-GMP signalling

(2009) Tilman Schirmer et al.   NATURE REVIEWS MICROBIOLOGY

HisE11 and HisF8 Provide Bis-histidyl Heme Hexa-coordination in the Globin Domain of Geobacter sulfurreducens Globin-coupled Sensor

(2008) Alessandra Pesce et al.   JOURNAL OF MOLECULAR BIOLOGY

Automated macromolecular model building for X-ray crystallography using ARP/wARP version 7

(2008) Gerrit Langer et al.   Nature Protocols

The Jpred 3 secondary structure prediction server

(2008) C. Cole et al.   NUCLEIC ACIDS RESEARCH

Screening of fusion partners for high yield expression and purification of bioactive viscotoxins

(2008) Julius Bogomolovas et al.   PROTEIN EXPRESSION AND PURIFICATION