ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function

Discriminative modelling of context-specific amino acid substitution probabilities

(2012) Christof Angermüller et al.   BIOINFORMATICS

Directed enzyme evolution: beyond the low-hanging fruit

(2012) Moshe Goldsmith et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Structure of the TatC core of the twin-arginine protein transport system

(2012) Sarah E. Rollauer et al.   NATURE

MarkUs: a server to navigate sequence-structure-function space

(2011) M. Fischer et al.   NUCLEIC ACIDS RESEARCH

Reorganizing the protein space at the Universal Protein Resource (UniProt)

(2011)   NUCLEIC ACIDS RESEARCH

Quality assessment of protein model-structures using evolutionary conservation

(2010) Matan Kalman et al.   BIOINFORMATICS

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

CD-HIT Suite: a web server for clustering and comparing biological sequences

(2010) Ying Huang et al.   BIOINFORMATICS

MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data

(2010) Gilad Wainreb et al.   NUCLEIC ACIDS RESEARCH

ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids

(2010) H. Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Predicting Protein Function and Binding Profile via Matching of Local Evolutionary and Geometric Surface Patterns

(2009) Yan Yuan Tseng et al.   JOURNAL OF MOLECULAR BIOLOGY

Crystal structures of oseltamivir-resistant influenza virus neuraminidase mutants

(2008) Patrick J. Collins et al.   NATURE

The ConSurf-DB: pre-calculated evolutionary conservation profiles of protein structures

(2008) Ofir Goldenberg et al.   NUCLEIC ACIDS RESEARCH

PDBsum new things

(2008) R. A. Laskowski   NUCLEIC ACIDS RESEARCH

Structure of influenza hemagglutinin in complex with an inhibitor of membrane fusion

(2008) R. J. Russell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection of Functionally Important Regions in “Hypothetical Proteins” of Known Structure

(2008) Guy Nimrod et al.   STRUCTURE

Proteopedia - a scientific 'wiki' bridging the rift between 3D structure and function of biomacromolecules

(2008) Eran Hodis et al.   GENOME BIOLOGY