Positional integration of lung adenocarcinoma susceptibility loci with primary human alveolar epithelial cell epigenomes
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Title
Positional integration of lung adenocarcinoma susceptibility loci with primary human alveolar epithelial cell epigenomes
Authors
Keywords
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Journal
Epigenomics
Volume 10, Issue 9, Pages 1167-1187
Publisher
Future Medicine Ltd
Online
2018-09-14
DOI
10.2217/epi-2018-0003
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Note: Only part of the references are listed.- Large-scale association analysis identifies new lung cancer susceptibility loci and heterogeneity in genetic susceptibility across histological subtypes
- (2017) James D McKay et al. NATURE GENETICS
- Meta-analysis of genome-wide association studies identifies multiple lung cancer susceptibility loci in never-smoking Asian women
- (2016) Zhaoming Wang et al. HUMAN MOLECULAR GENETICS
- The importance of detailed epigenomic profiling of different cell types within organs
- (2016) Theresa Ryan Stueve et al. Epigenomics
- Fine mapping of chromosome 5p15.33 based on a targeted deep sequencing and high density genotyping identifies novel lung cancer susceptibility loci
- (2015) Linda Kachuri et al. CARCINOGENESIS
- Histone modifications predispose genome regions to breakage and translocation
- (2015) Bharat Burman et al. GENES & DEVELOPMENT
- Role of co-regulators in metabolic and transcriptional actions of thyroid hormone
- (2015) Inna Astapova JOURNAL OF MOLECULAR ENDOCRINOLOGY
- Conserved epigenomic signals in mice and humans reveal immune basis of Alzheimer’s disease
- (2015) Elizabeta Gjoneska et al. NATURE
- Large-scale identification of sequence variants influencing human transcription factor occupancy in vivo
- (2015) Matthew T Maurano et al. NATURE GENETICS
- HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and disease
- (2015) Lucas D. Ward et al. NUCLEIC ACIDS RESEARCH
- Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome
- (2015) Yu Gyoung Tak et al. Epigenetics & Chromatin
- Clinicopathologic and prognostic significance of c-MYC copy number gain in lung adenocarcinomas
- (2014) A N Seo et al. BRITISH JOURNAL OF CANCER
- Susceptibility loci for lung cancer are associated with mRNA levels of nearby genes in the lung
- (2014) Justin Dang Uy Nguyen et al. CARCINOGENESIS
- Lung development: orchestrating the generation and regeneration of a complex organ
- (2014) M. Herriges et al. DEVELOPMENT
- Imputation and subset-based association analysis across different cancer types identifies multiple independent risk loci in the TERT-CLPTM1L region on chromosome 5p15.33
- (2014) Z. Wang et al. HUMAN MOLECULAR GENETICS
- Recurrent TERT promoter mutations in non-small cell lung cancers
- (2014) Xiao Ma et al. LUNG CANCER
- Alveolar progenitor and stem cells in lung development, renewal and cancer
- (2014) Tushar J. Desai et al. NATURE
- Genetic and epigenetic fine mapping of causal autoimmune disease variants
- (2014) Kyle Kai-How Farh et al. NATURE
- Rare variants of large effect in BRCA2 and CHEK2 affect risk of lung cancer
- (2014) Yufei Wang et al. NATURE GENETICS
- Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants
- (2014) Lorenzo Pasquali et al. NATURE GENETICS
- DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data
- (2014) Ayako Suzuki et al. NUCLEIC ACIDS RESEARCH
- Functional annotation of colon cancer risk SNPs
- (2014) Lijing Yao et al. Nature Communications
- Comprehensive Functional Annotation of 77 Prostate Cancer Risk Loci
- (2014) Dennis J. Hazelett et al. PLoS Genetics
- CRR9/CLPTM1L Regulates Cell Survival Signaling and Is Required for Ras Transformation and Lung Tumorigenesis
- (2013) M. A. James et al. CANCER RESEARCH
- Integrated cistromic and expression analysis of amplified NKX2-1 in lung adenocarcinoma identifies LMO3 as a functional transcriptional target
- (2013) H. Watanabe et al. GENES & DEVELOPMENT
- The Genotype-Tissue Expression (GTEx) project
- (2013) John Lonsdale et al. NATURE GENETICS
- Systematic discovery and characterization of regulatory motifs in ENCODE TF binding experiments
- (2013) P. Kheradpour et al. NUCLEIC ACIDS RESEARCH
- Comprehensive Functional Annotation of Seventy-One Breast Cancer Risk Loci
- (2013) Suhn Kyong Rhie et al. PLoS One
- Identification of cancer initiating cells in K-Ras driven lung adenocarcinoma
- (2013) S. Mainardi et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics
- (2013) Ekta Khurana et al. SCIENCE
- Integrated Transcriptomic and Epigenomic Analysis of Primary Human Lung Epithelial Cell Differentiation
- (2013) Crystal N. Marconett et al. PLoS Genetics
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
- (2012) H. Thorvaldsdottir et al. BRIEFINGS IN BIOINFORMATICS
- Multiple variants of TERT and CLPTM1L constitute risk factors for lung adenocarcinoma
- (2012) X.F. Chen et al. GENETICS AND MOLECULAR RESEARCH
- Linking disease associations with regulatory information in the human genome
- (2012) M. A. Schaub et al. GENOME RESEARCH
- Influence of common genetic variation on lung cancer risk: meta-analysis of 14 900 cases and 29 485 controls
- (2012) Maria N. Timofeeva et al. HUMAN MOLECULAR GENETICS
- Building and maintaining the epithelium of the lung
- (2012) Craig R. Rackley et al. JOURNAL OF CLINICAL INVESTIGATION
- Telomerase Reverse Transcriptase Locus Polymorphisms and Cancer Risk: A Field Synopsis and Meta-Analysis
- (2012) Simone Mocellin et al. JNCI-Journal of the National Cancer Institute
- The long-range interaction landscape of gene promoters
- (2012) Amartya Sanyal et al. NATURE
- Genome-wide association analysis identifies new lung cancer susceptibility loci in never-smoking women in Asia
- (2012) Qing Lan et al. NATURE GENETICS
- A genome-wide association study identifies two new susceptibility loci for lung adenocarcinoma in the Japanese population
- (2012) Kouya Shiraishi et al. NATURE GENETICS
- Association analyses identify multiple new lung cancer susceptibility loci and their interactions with smoking in the Chinese population
- (2012) Jing Dong et al. NATURE GENETICS
- RET, ROS1 and ALK fusions in lung cancer
- (2012) Kengo Takeuchi et al. NATURE MEDICINE
- HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
- (2012) Ivan V. Kulakovskiy et al. NUCLEIC ACIDS RESEARCH
- FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs
- (2012) Simon G. Coetzee et al. NUCLEIC ACIDS RESEARCH
- Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium
- (2012) J. Wang et al. NUCLEIC ACIDS RESEARCH
- Functional Characterization of CLPTM1L as a Lung Cancer Risk Candidate Gene in the 5p15.33 Locus
- (2012) Michael A. James et al. PLoS One
- Alveolar Type II Cells Possess the Capability of Initiating Lung Tumor Development
- (2012) Chuwen Lin et al. PLoS One
- Evidence for type II cells as cells of origin of K-Ras-induced distal lung adenocarcinoma
- (2012) X. Xu et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Epigenomic Enhancer Profiling Defines a Signature of Colon Cancer
- (2012) B. Akhtar-Zaidi et al. SCIENCE
- Integrated annotation and analysis of genetic variants from next-generation sequencing studies with variant tools
- (2011) F. A. San Lucas et al. BIOINFORMATICS
- FIMO: scanning for occurrences of a given motif
- (2011) Charles E. Grant et al. BIOINFORMATICS
- Global cancer statistics
- (2011) Ahmedin Jemal et al. CA-A CANCER JOURNAL FOR CLINICIANS
- A genome-wide association study identifies two new lung cancer susceptibility loci at 13q12.12 and 22q12.2 in Han Chinese
- (2011) Zhibin Hu et al. NATURE GENETICS
- Principles for the post-GWAS functional characterization of cancer risk loci
- (2011) Matthew L Freedman et al. NATURE GENETICS
- In Vitro and Ex Vivo Analysis of CHRNA3 and CHRNA5 Haplotype Expression
- (2011) Glenn A. Doyle et al. PLoS One
- Regulated gene expression in cultured type II cells of adult human lung
- (2010) Philip L. Ballard et al. AMERICAN JOURNAL OF PHYSIOLOGY-LUNG CELLULAR AND MOLECULAR PHYSIOLOGY
- MYC Amplification as a Prognostic Marker of Early-Stage Lung Adenocarcinoma Identified by Whole Genome Copy Number Analysis
- (2010) Reika Iwakawa et al. CLINICAL CANCER RESEARCH
- Genetic variants and risk of lung cancer in never smokers: a genome-wide association study
- (2010) Yafei Li et al. LANCET ONCOLOGY
- Genetics of lung-cancer susceptibility
- (2010) Paul Brennan et al. LANCET ONCOLOGY
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Cell of origin of lung cancer
- (2010) Kate D. Sutherland et al. Molecular Oncology
- Diverse somatic mutation patterns and pathway alterations in human cancers
- (2010) Zhengyan Kan et al. NATURE
- Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
- (2010) Cole Trapnell et al. NATURE BIOTECHNOLOGY
- Variation in TP63 is associated with lung adenocarcinoma susceptibility in Japanese and Korean populations
- (2010) Daiki Miki et al. NATURE GENETICS
- The nicotinic acetylcholine receptor CHRNA5/A3/B4 gene cluster: Dual role in nicotine addiction and lung cancer
- (2010) Ma. Reina D. Improgo et al. PROGRESS IN NEUROBIOLOGY
- The 5p15.33 Locus Is Associated with Risk of Lung Adenocarcinoma in Never-Smoking Females in Asia
- (2010) Chao Agnes Hsiung et al. PLoS Genetics
- A Genome-wide Association Study of Lung Cancer Identifies a Region of Chromosome 5p15 Associated with Risk for Adenocarcinoma
- (2009) Maria Teresa Landi et al. AMERICAN JOURNAL OF HUMAN GENETICS
- A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
- (2009) Chongzhi Zang et al. BIOINFORMATICS
- Thyroid Function and Cancer Risk: A Prospective Population Study
- (2009) A. I. Hellevik et al. CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION
- The Great Big Alveolar TI Cell: Evolving Concepts and Paradigms
- (2009) Leland Dobbs et al. CELLULAR PHYSIOLOGY AND BIOCHEMISTRY
- Transcription Deregulation at the 15q25 Locus in Association with Lung Adenocarcinoma Risk
- (2009) F. S. Falvella et al. CLINICAL CANCER RESEARCH
- Histone modifications at human enhancers reflect global cell-type-specific gene expression
- (2009) Nathaniel D. Heintzman et al. NATURE
- Blocking Neuropilin-2 Function Inhibits Tumor Cell Metastasis
- (2008) Maresa Caunt et al. CANCER CELL
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
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