Integration of the proteome and transcriptome reveals multiple levels of gene regulation in the rice dl2 mutant

Coupled carbon, sulfur and nitrogen cycles of mixotrophic growth of Pseudomonas sp. C27 under denitrifying sulfide removal conditions

(2014) Hongliang Guo et al.   BIORESOURCE TECHNOLOGY

Deep and Precise Quantification of the Mouse Synaptosomal Proteome Reveals Substantial Remodeling during Postnatal Maturation

(2014) Kaja Ewa Moczulska et al.   JOURNAL OF PROTEOME RESEARCH

The Arabidopsis U11/U12-65K is an indispensible component of minor spliceosome and plays a crucial role in U12 intron splicing and plant development

(2014) Hyun Ju Jung et al.   PLANT JOURNAL

Catalytic Profile of Arabidopsis Peroxidases, AtPrx-2, 25 and 71, Contributing to Stem Lignification

(2014) Jun Shigeto et al.   PLoS One

The Plant Vascular System: Evolution, Development and FunctionsF

(2013) William J. Lucas et al.   Journal of Integrative Plant Biology

Dynamic Proteomics Emphasizes the Importance of Selective mRNA Translation and Protein Turnover duringArabidopsisSeed Germination

(2013) Marc Galland et al.   MOLECULAR & CELLULAR PROTEOMICS

The Metabolic Regulation of Sporulation and Parasporal Crystal Formation inBacillus thuringiensisRevealed by Transcriptomics and Proteomics

(2013) Jieping Wang et al.   MOLECULAR & CELLULAR PROTEOMICS

U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs

(2013) Jermaine L. Jenkins et al.   NUCLEIC ACIDS RESEARCH

LACCASE Is Necessary and Nonredundant with PEROXIDASE for Lignin Polymerization during Vascular Development in Arabidopsis

(2013) Q. Zhao et al.   PLANT CELL

Differential expression of trehalose 6-P phosphatase and ascorbate peroxidase transcripts in nodule cortex of Phaseolus vulgaris and regulation of nodule O2 permeability

(2013) Adnane Bargaz et al.   PLANTA

Testing potential selective agents acting on leaf shape inIpomoea hederacea: predictions based on an adaptive leaf shape cline

(2013) Brandon E. Campitelli et al.   Ecology and Evolution

Overexpression of plastidial thioredoxins f and m differentially alters photosynthetic activity and response to oxidative stress in tobacco plants

(2013) Pascal Rey et al.   Frontiers in Plant Science

Thioredoxin and Glutaredoxin Systems in Plants: Molecular Mechanisms, Crosstalks, and Functional Significance

(2012) Yves Meyer et al.   ANTIOXIDANTS & REDOX SIGNALING

Proteomic analysis of grapevine resistance induced by Trichoderma harzianum T39 reveals specific defence pathways activated against downy mildew

(2012) Maria Cristina Palmieri et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Proteomic Analysis Reveals that Antioxidation Mechanisms Contribute to Cold Tolerance in Plantain (Musa paradisiacaL.; ABB Group) Seedlings

(2012) Qiao-Song Yang et al.   MOLECULAR & CELLULAR PROTEOMICS

hnRNP A1 Proofreads 3′ Splice Site Recognition by U2AF

(2012) Joao Paulo Tavanez et al.   MOLECULAR CELL

Ectopic expression of Arabidopsis glutaredoxin AtGRXS17 enhances thermotolerance in tomato

(2012) Qingyu Wu et al.   PLANT BIOTECHNOLOGY JOURNAL

Differential expression in RNA-seq: A matter of depth

(2011) S. Tarazona et al.   GENOME RESEARCH

Glutaredoxin GRXS13 plays a key role in protection against photooxidative stress in Arabidopsis

(2011) Daniel Laporte et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Proteomics Reveals New Insights into Erythrocyte Invasion byPlasmodium falciparum

(2011) Claudia Kuss et al.   MOLECULAR & CELLULAR PROTEOMICS

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Comparative iTRAQ proteome and transcriptome analyses of sweet orange infected by “Candidatus Liberibacter asiaticus”

(2011) Jing Fan et al.   PHYSIOLOGIA PLANTARUM

Nucleoid-Enriched Proteomes in Developing Plastids and Chloroplasts from Maize Leaves: A New Conceptual Framework for Nucleoid Functions

(2011) W. Majeran et al.   PLANT PHYSIOLOGY

The physiological mechanism of a drooping leaf2 mutation in rice

(2011) Junli Huang et al.   PLANT SCIENCE

Knock-out mutations of Arabidopsis SmD3-b induce pleotropic phenotypes through altered transcript splicing

(2011) A.M. Swaraz et al.   PLANT SCIENCE

Comparative Analysis of Proteome and Transcriptome Variation in Mouse

(2011) Anatole Ghazalpour et al.   PLoS Genetics

The carotenoid dioxygenase gene family in maize, sorghum, and rice

(2010) Ratnakar Vallabhaneni et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Transcriptional regulation of vascular cell fates

(2010) Kyoko Ohashi-Ito et al.   CURRENT OPINION IN PLANT BIOLOGY

Interplay between the NADP-Linked Thioredoxin and Glutathione Systems in Arabidopsis Auxin Signaling

(2010) T. Bashandy et al.   PLANT CELL

iTRAQ Protein Profile Analysis of Arabidopsis Roots Reveals New Aspects Critical for Iron Homeostasis

(2010) P. Lan et al.   PLANT PHYSIOLOGY

Transcriptome Analysis of the Brown Planthopper Nilaparvata lugens

(2010) Jian Xue et al.   PLoS One

Next-generation tag sequencing for cancer gene expression profiling

(2009) A. S. Morrissy et al.   GENOME RESEARCH

Plant SMU-1 and SMU-2 Homologues Regulate Pre-mRNA Splicing and Multiple Aspects of Development

(2009) T. Chung et al.   PLANT PHYSIOLOGY

Comparative proteome and transcriptome analyses of embryonic stem cells during embryoid body-based differentiation

(2009) Ali Fathi et al.   PROTEOMICS

Investigating the correspondence between transcriptomic and proteomic expression profiles using coupled cluster models

(2008) Simon Rogers et al.   BIOINFORMATICS

Hybridization of Pulsed-Q Dissociation and Collision-Activated Dissociation in Linear Ion Trap Mass Spectrometer for iTRAQ Quantitation

(2008) Tiannan Guo et al.   JOURNAL OF PROTEOME RESEARCH

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

(2008) Peter A. C. 't Hoen et al.   NUCLEIC ACIDS RESEARCH

Identification of potential protein regulators bound to the tissue-specific positive and negativecis-acting elements of a green tissue-specific promoter in rice

(2008) M. Cai et al.   PLANT BIOLOGY

Vein patterning screens and the defectively organized tributaries mutants in Arabidopsis thaliana

(2008) Jalean Joyanne Petricka et al.   PLANT JOURNAL

Hormone interactions during vascular development

(2008) Jan Dettmer et al.   PLANT MOLECULAR BIOLOGY

Comments on: Control of the false discovery rate under dependence using the bootstrap and subsampling

(2008) Daniel Yekutieli   TEST