Global analysis of WRKY transcription factor superfamily in Setaria identifies potential candidates involved in abiotic stress signaling

Exploration of millet models for developing nutrient rich graminaceous crops

(2016) Mehanathan Muthamilarasan et al.   PLANT SCIENCE

Brachypodium distachyonandSetaria viridis: Model Genetic Systems for the Grasses

(2015) Thomas P. Brutnell et al.   Annual Review of Plant Biology

Genome-wide identification and comparative expression analysis reveal a rapid expansion and functional divergence of duplicated genes in the WRKY gene family of cabbage, Brassica oleracea var. capitata

(2015) Qiu-Yang Yao et al.   GENE

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

Application of genomics-assisted breeding for generation of climate resilient crops: progress and prospects

(2015) Chittaranjan Kole et al.   Frontiers in Plant Science

Transcriptome-Wide Identification of Salt-Responsive Members of the WRKY Gene Family in Gossypium aridum

(2015) Xinqi Fan et al.   PLoS One

GSDS 2.0: an upgraded gene feature visualization server

(2014) Bo Hu et al.   BIOINFORMATICS

Genome-wide identification of WRKY family genes and their response to cold stress in Vitis vinifera

(2014) Lina Wang et al.   BMC PLANT BIOLOGY

Genome-wide analysis of WRKY gene family in Arabidopsis lyrata and comparison with Arabidopsis thaliana and Populus trichocarpa

(2014) Yu Song et al.   CHINESE SCIENCE BULLETIN

Genome-Wide Evolutionary Characterization and Expression Analyses of WRKY Family Genes in Brachypodium distachyon

(2014) F. Wen et al.   DNA RESEARCH

C2H2 type of zinc finger transcription factors in foxtail millet define response to abiotic stresses

(2014) Mehanathan Muthamilarasan et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Genome-wide identification and characterization of WRKY gene family in Hevea brasiliensis

(2014) Hui-Liang Li et al.   GENOMICS

Genome-wide identification and characterization of the Populus WRKY transcription factor family and analysis of their expression in response to biotic and abiotic stresses

(2014) Yuanzhong Jiang et al.   JOURNAL OF EXPERIMENTAL BOTANY

FmTFDb: a foxtail millet transcription factors database for expediting functional genomics in millets

(2014) Venkata Suresh Bonthala et al.   MOLECULAR BIOLOGY REPORTS

Genome-wide investigation and transcriptome analysis of the WRKY gene family in Gossypium

(2014) Mingquan Ding et al.   MOLECULAR GENETICS AND GENOMICS

Genome-wide analysis of the WRKY gene family in cotton

(2014) Lingling Dou et al.   MOLECULAR GENETICS AND GENOMICS

Transcriptome-wide identification of bread wheat WRKY transcription factors in response to drought stress

(2014) Sezer Okay et al.   MOLECULAR GENETICS AND GENOMICS

Phylogenetic analysis of barley WRKY proteins and characterization of HvWRKY1 and -2 as repressors of the pathogen-inducible gene HvGER4c

(2014) Dilin Liu et al.   MOLECULAR GENETICS AND GENOMICS

In silico identification of transcription factors in Medicago sativa using available transcriptomic resources

(2014) Olga A. Postnikova et al.   MOLECULAR GENETICS AND GENOMICS

WRKY41 controls Arabidopsis seed dormancy via direct regulation ofABI3transcript levels not downstream of ABA

(2014) Zhong Jie Ding et al.   PLANT JOURNAL

Involvement of the OsMKK4-OsMPK1 Cascade and its Downstream Transcription Factor OsWRKY53 in the Wounding Response in Rice

(2014) Seung Jin Yoo et al.   Plant Pathology Journal

Genome-Wide Investigation and Expression Analyses of WD40 Protein Family in the Model Plant Foxtail Millet (Setaria italica L.)

(2014) Awdhesh Kumar Mishra et al.   PLoS One

Dlf1, a WRKY Transcription Factor, Is Involved in the Control of Flowering Time and Plant Height in Rice

(2014) Yuhui Cai et al.   PLoS One

Identification and Molecular Characterization of MYB Transcription Factor Superfamily in C4 Model Plant Foxtail Millet (Setaria italica L.)

(2014) Mehanathan Muthamilarasan et al.   PLoS One

Genome-Wide Investigation and Expression Profiling of AP2/ERF Transcription Factor Superfamily in Foxtail Millet (Setaria italica L.)

(2014) Charu Lata et al.   PLoS One

Advances in Setaria genomics for genetic improvement of cereals and bioenergy grasses

(2014) Mehanathan Muthamilarasan et al.   THEORETICAL AND APPLIED GENETICS

Phosphorylation of a WRKY Transcription Factor by MAPKs Is Required for Pollen Development and Function in Arabidopsis

(2014) Yuefeng Guan et al.   PLoS Genetics

Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis)

(2013) Jun Tang et al.   BMC PLANT BIOLOGY

Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.)

(2013) Wangdan Xiong et al.   GENE

Plant innate immunity: An updated insight into defense mechanism

(2013) Mehanathan Muthamilarasan et al.   JOURNAL OF BIOSCIENCES

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptome-wide identification of R2R3-MYB transcription factors in barley with their boron responsive expression analysis

(2013) Huseyin Tombuloglu et al.   MOLECULAR GENETICS AND GENOMICS

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Reference genes for quantitative real-time PCR analysis in the model plant foxtail millet (Setaria italica L.) subjected to abiotic stress conditions

(2013) Karunesh Kumar et al.   PLANT CELL TISSUE AND ORGAN CULTURE

Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C4 photosynthesis research

(2013) Jiajia Xu et al.   PLANT MOLECULAR BIOLOGY

Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing

(2013) Xin Qi et al.   PLANT MOLECULAR BIOLOGY

MlWRKY12, a novel Miscanthus transcription factor, participates in pith secondary cell wall formation and promotes flowering

(2013) Yanchong Yu et al.   PLANT SCIENCE

Comprehensive Genome-Wide Survey, Genomic Constitution and Expression Profiling of the NAC Transcription Factor Family in Foxtail Millet (Setaria italica L.)

(2013) Swati Puranik et al.   PLoS One

Comparative Transcriptome Profiling of a Resistant vs. Susceptible Tomato (Solanum lycopersicum) Cultivar in Response to Infection by Tomato Yellow Leaf Curl Virus

(2013) Tianzi Chen et al.   PLoS One

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Foxtail millet: a model crop for genetic and genomic studies in bioenergy grasses

(2012) Charu Lata et al.   CRITICAL REVIEWS IN BIOTECHNOLOGY

Molecular Phylogenetic and Expression Analysis of the Complete WRKY Transcription Factor Family in Maize

(2012) K.-F. Wei et al.   DNA RESEARCH

Identification and expression profiles of the WRKY transcription factor family in Ricinus communis

(2012) Hui-Liang Li et al.   GENE

Genome-wide analysis of WRKY transcription factors in Solanum lycopersicum

(2012) Shengxiong Huang et al.   MOLECULAR GENETICS AND GENOMICS

Reference genome sequence of the model plant Setaria

(2012) Jeffrey L Bennetzen et al.   NATURE BIOTECHNOLOGY

Genome sequence of foxtail millet (Setaria italica) provides insights into grass evolution and biofuel potential

(2012) Gengyun Zhang et al.   NATURE BIOTECHNOLOGY

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa

(2012) Hongsheng He et al.   PLANT CELL REPORTS

Capsicum annuum WRKY transcription factor d (CaWRKYd) regulates hypersensitive response and defense response upon Tobacco mosaic virus infection

(2012) Sung Un Huh et al.   PLANT SCIENCE

NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

(2012) Ravi K. Patel et al.   PLoS One

NAC proteins: regulation and role in stress tolerance

(2012) Swati Puranik et al.   TRENDS IN PLANT SCIENCE

The role of WRKY transcription factors in plant abiotic stresses

(2011) Ligang Chen et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Genome-wide analysis of WRKY gene family in Cucumis sativus

(2011) Jian Ling et al.   BMC GENOMICS

Roles of arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress

(2011) Han Chen et al.   BMC PLANT BIOLOGY

Setaria viridis and Setaria italica, model genetic systems for the Panicoid grasses

(2011) P. Li et al.   JOURNAL OF EXPERIMENTAL BOTANY

Regulatory mechanisms underlying C4 photosynthesis

(2011) Lin Wang et al.   NEW PHYTOLOGIST

Phytozome: a comparative platform for green plant genomics

(2011) David M. Goodstein et al.   NUCLEIC ACIDS RESEARCH

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

The Transcription Factor CrWRKY1 Positively Regulates the Terpenoid Indole Alkaloid Biosynthesis in Catharanthus roseus

(2011) N. Suttipanta et al.   PLANT PHYSIOLOGY

Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance

(2011) Shujia Li et al.   PLANTA

Comparative transcriptome analysis of differentially expressed genes in foxtail millet ( Setaria italica L.) during dehydration stress

(2010) Charu Lata et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Overexpression of OsWRKY72 gene interferes in the abscisic acid signal and auxin transport pathway of Arabidopsis

(2010) Yu Song et al.   JOURNAL OF BIOSCIENCES

Male gametophyte-specific WRKY34 transcription factor mediates cold sensitivity of mature pollen in Arabidopsis

(2010) Changsong Zou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Comparative transcriptome analysis of contrasting foxtail millet cultivars in response to short-term salinity stress

(2010) Swati Puranik et al.   JOURNAL OF PLANT PHYSIOLOGY

The Mg-Chelatase H Subunit ofArabidopsisAntagonizes a Group of WRKY Transcription Repressors to Relieve ABA-Responsive Genes of Inhibition

(2010) Yi Shang et al.   PLANT CELL

Setaria viridis: A Model for C4 Photosynthesis

(2010) T. P. Brutnell et al.   PLANT CELL

ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis

(2010) Xiaozhi Ren et al.   PLANT JOURNAL

Mutation of WRKY transcription factors initiates pith secondary wall formation and increases stem biomass in dicotyledonous plants

(2010) H. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

Overexpression of the stress-induced OsWRKY08 improves osmotic stress tolerance in Arabidopsis

(2010) Yu Song et al.   Science Bulletin

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Isolation and Characterization of AaWRKY1, an Artemisia annua Transcription Factor that Regulates the Amorpha-4,11-diene Synthase Gene, a Key Gene of Artemisinin Biosynthesis

(2009) Dongming Ma et al.   PLANT AND CELL PHYSIOLOGY

The WRKY6 Transcription Factor Modulates PHOSPHATE1 Expression in Response to Low Pi Stress in Arabidopsis

(2009) Y.-F. Chen et al.   PLANT CELL

Functional analysis of an Arabidopsis transcription factor WRKY25 in heat stress

(2009) Shujia Li et al.   PLANT CELL REPORTS

Arabidopsis WRKY38 and WRKY62 Transcription Factors Interact with Histone Deacetylase 19 in Basal Defense

(2008) K.-C. Kim et al.   PLANT CELL

A novel WRKY transcriptional factor from Thlaspi caerulescens negatively regulates the osmotic stress tolerance of transgenic tobacco

(2008) Wei Wei et al.   PLANT CELL REPORTS

Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter

(2008) Xiaolan Wu et al.   PLANT CELL REPORTS

Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses

(2008) Yuanqing Jiang et al.   PLANT MOLECULAR BIOLOGY