Genome-wide investigation and transcriptome analysis of the WRKY gene family in Gossypium

Single-Nucleotide Resolution Mapping of the Gossypium raimondii Transcriptome Reveals a New Mechanism for Alternative Splicing of Introns

(2014) Qin Li et al.   Molecular Plant

Genome sequence of the cultivated cotton Gossypium arboreum

(2014) Fuguang Li et al.   NATURE GENETICS

PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors

(2013) Jinpu Jin et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic and Physiological Variations of Three Arabidopsis Ecotypes in Response to Salt Stress

(2013) Yanping Wang et al.   PLoS One

Comparative transcriptomic analysis of roots of contrasting Gossypium herbaceum genotypes revealing adaptation to drought

(2012) Alok Ranjan et al.   BMC GENOMICS

Genome wide expression profiling of two accession of G. herbaceum L. in response to drought

(2012) Alok Ranjan et al.   BMC GENOMICS

GhWRKY15, a member of the WRKY transcription factor family identified from cotton (Gossypium hirsutum L.), is involved in disease resistance and plant development

(2012) Feifei Yu et al.   BMC PLANT BIOLOGY

Molecular Phylogenetic and Expression Analysis of the Complete WRKY Transcription Factor Family in Maize

(2012) K.-F. Wei et al.   DNA RESEARCH

Identification and expression profiles of the WRKY transcription factor family in Ricinus communis

(2012) Hui-Liang Li et al.   GENE

Cooperation of three WRKY-domain transcription factors WRKY18, WRKY40, and WRKY60 in repressing two ABA-responsive genes ABI4 and ABI5 in Arabidopsis

(2012) Zhi-Qiang Liu et al.   JOURNAL OF EXPERIMENTAL BOTANY

GbTCP, a cotton TCP transcription factor, confers fibre elongation and root hair development by a complex regulating system

(2012) Juan Hao et al.   JOURNAL OF EXPERIMENTAL BOTANY

Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres

(2012) Andrew H. Paterson et al.   NATURE

The draft genome of a diploid cotton Gossypium raimondii

(2012) Kunbo Wang et al.   NATURE GENETICS

PIECE: a database for plant gene structure comparison and evolution

(2012) Yi Wang et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Wheat WRKY genes TaWRKY2 and TaWRKY19 regulate abiotic stress tolerance in transgenic Arabidopsis plants

(2012) CAN-FANG NIU et al.   PLANT CELL AND ENVIRONMENT

Overexpression of GbWRKY1 positively regulates the Pi starvation response by alteration of auxin sensitivity in Arabidopsis

(2012) Li Xu et al.   PLANT CELL REPORTS

Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa

(2012) Hongsheng He et al.   PLANT CELL REPORTS

Capsicum annuum WRKY transcription factor d (CaWRKYd) regulates hypersensitive response and defense response upon Tobacco mosaic virus infection

(2012) Sung Un Huh et al.   PLANT SCIENCE

Deep Sequencing Reveals Differences in the Transcriptional Landscapes of Fibers from Two Cultivated Species of Cotton

(2012) Jean-Marc Lacape et al.   PLoS One

The Roles of Gene Duplication, Gene Conversion and Positive Selection in Rodent Esp and Mup Pheromone Gene Families with Comparison to the Abp Family

(2012) Robert C. Karn et al.   PLoS One

Cotton fiber: a powerful single-cell model for cell wall and cellulose research

(2012) Candace H. Haigler et al.   Frontiers in Plant Science

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Genome-wide analysis of WRKY gene family in Cucumis sativus

(2011) Jian Ling et al.   BMC GENOMICS

WRKY gene family evolution in Arabidopsis thaliana

(2011) Qishan Wang et al.   GENETICA

Transcriptome analysis reveals salt-stress-regulated biological processes and key pathways in roots of cotton (Gossypium hirsutum L.)

(2011) Dongxia Yao et al.   GENOMICS

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Genome-wide transcriptomic analysis of cotton under drought stress reveal significant down-regulation of genes and pathways involved in fibre elongation and up-regulation of defense responsive genes

(2011) Kethireddy Venkata Padmalatha et al.   PLANT MOLECULAR BIOLOGY

Parallel up-regulation of the profilin gene family following independent domestication of diploid and allopolyploid cotton (Gossypium)

(2011) Y. Bao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SOAPsplice: Genome-Wide ab initio Detection of Splice Junctions from RNA-Seq Data

(2011) Songbo Huang et al.   Frontiers in Genetics

How cotton fibers elongate: a tale of linear cell-growth mode

(2010) Yong-Mei Qin et al.   CURRENT OPINION IN PLANT BIOLOGY

WRKY: its structure, evolutionary relationship, DNA-binding selectivity, role in stress tolerance and development of plants

(2010) Parinita Agarwal et al.   MOLECULAR BIOLOGY REPORTS

GhWRKY3, a novel cotton (Gossypium hirsutum L.) WRKY gene, is involved in diverse stress responses

(2010) Ruoyu Guo et al.   MOLECULAR BIOLOGY REPORTS

MapSplice: Accurate mapping of RNA-seq reads for splice junction discovery

(2010) Kai Wang et al.   NUCLEIC ACIDS RESEARCH

ABO3, a WRKY transcription factor, mediates plant responses to abscisic acid and drought tolerance in Arabidopsis

(2010) Xiaozhi Ren et al.   PLANT JOURNAL

Identification of salt responsive genes using comparative microarray analysis in Upland cotton (Gossypium hirsutum L.)

(2010) Laura Rodriguez-Uribe et al.   PLANT SCIENCE

WRKY transcription factors

(2010) Paul J. Rushton et al.   TRENDS IN PLANT SCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The telomere-linked helicase (TLH) gene family in Magnaporthe oryzae: revised gene structure reveals a novel TLH-specific protein motif

(2009) Cathryn J. Rehmeyer et al.   CURRENT GENETICS

A Novel WRKY-like Protein Involved in Transcriptional Activation of Cyst Wall Protein Genes inGiardia lamblia

(2009) Yu-Jiao Pan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The Role of WRKY Transcription Factors in Plant Immunity

(2009) S. P. Pandey et al.   PLANT PHYSIOLOGY

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

(2009) Guixia Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Expression profile analysis of genes involved in cell wall regeneration during protoplast culture in cotton by suppression subtractive hybridization and macroarray

(2008) Xiyan Yang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Phylogeny, gene structures, and expression patterns of the ERF gene family in soybean (Glycine max L.)

(2008) Gaiyun Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant

(2008) R. Hovav et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synteny and Collinearity in Plant Genomes

(2008) H. Tang et al.   SCIENCE

MeV+R: using MeV as a graphical user interface for Bioconductor applications in microarray analysis

(2008) Vu T Chu et al.   GENOME BIOLOGY