Transcriptome-based gene profiling provides novel insights into the characteristics of radish root response to Cr stress with next-generation sequencing

Expression profiling reveals functionally redundant multiple-copy genes related to zinc, iron and cadmium responses inBrassica rapa

(2014) Jimeng Li et al.   NEW PHYTOLOGIST

Brassinosteroids and their role in response of plants to abiotic stresses

(2013) Q. Fariduddin et al.   BIOLOGIA PLANTARUM

Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

(2013) Zhen-hua Dang et al.   BMC GENOMICS

Transcriptome Profile Analysis of Maize Seedlings in Response to High-salinity, Drought and Cold Stresses by Deep Sequencing

(2013) Xiaohui Shan et al.   PLANT MOLECULAR BIOLOGY REPORTER

Transcriptome Profiling of Radish (Raphanus sativus L.) Root and Identification of Genes Involved in Response to Lead (Pb) Stress with Next Generation Sequencing

(2013) Yan Wang et al.   PLoS One

Analysis of differentially expressed genes in abiotic stress response and their role in signal transduction pathways

(2013) Sanchita et al.   PROTOPLASMA

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR

(2012) Yuanyuan Xu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Glutathione-Mediated Alleviation of Chromium Toxicity in Rice Plants

(2012) Fanrong Zeng et al.   BIOLOGICAL TRACE ELEMENT RESEARCH

Molecular mechanistic model of plant heavy metal tolerance

(2012) Ganesh Thapa et al.   BIOMETALS

Transcript Pattern of Cytochrome P450, Antioxidant and Ginsenoside Biosynthetic Pathway Genes Under Heavy Metal Stress in Panax ginseng Meyer

(2012) Sri Renuka Devi Balusamy et al.   BULLETIN OF ENVIRONMENTAL CONTAMINATION AND TOXICOLOGY

Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing

(2012) Xiu-Duo Fan et al.   GENE

Characterization of a vacuolar zinc transporter OZT1 in rice (Oryza sativa L.)

(2012) Hong-Xia Lan et al.   MOLECULAR BIOLOGY REPORTS

Digital gene expression analysis of early root infection resistance to Sporisorium reilianum f. sp. zeae in maize

(2012) Shaopeng Zhang et al.   MOLECULAR GENETICS AND GENOMICS

Transcriptome analyses of Bactericera cockerelli adults in response to “Candidatus Liberibacter solanacearum” infection

(2012) Punya Nachappa et al.   MOLECULAR GENETICS AND GENOMICS

Comparative transcriptome analysis of transporters, phytohormone and lipid metabolism pathways in response to arsenic stress in rice (Oryza sativa)

(2012) Lu-jun Yu et al.   NEW PHYTOLOGIST

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

(2012) Xue-Mei Zhang et al.   PLoS One

Overview of available methods for diverse RNA-Seq data analyses

(2012) Geng Chen et al.   Science China-Life Sciences

Heavy metal accumulation in vegetables grown in a long-term wastewater-irrigated agricultural land of tropical India

(2011) N. Gupta et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Physiological changes induced by chromium stress in plants: an overview

(2011) Shamsul Hayat et al.   PROTOPLASMA

Transcriptomic and metabolomic shifts in rice roots in response to Cr (VI) stress

(2010) Sonali Dubey et al.   BMC GENOMICS

Transcriptome analysis reveals novel genes involved in nonhost response to bacterial infection in tobacco

(2010) Lucas Damián Daurelio et al.   JOURNAL OF PLANT PHYSIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Transcriptional profiling of Arabidopsis seedlings in response to heavy metal lead (Pb)

(2009) Tie Liu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Gene expression analysis in cadmium-stressed roots of a low cadmium-accumulating solanaceous plant, Solanum torvum

(2009) Hirotaka Yamaguchi et al.   JOURNAL OF EXPERIMENTAL BOTANY

Expression of stress-related genes in tomato plants exposed to arsenic and chromium in nutrient solution

(2009) Pascale Goupil et al.   JOURNAL OF PLANT PHYSIOLOGY

Chromium interactions in plants: current status and future strategies

(2009) Arun Kumar Shanker et al.   Metallomics

Heavy metals toxicity in plants: An overview on the role of glutathione and phytochelatins in heavy metal stress tolerance of plants

(2009) S.K. Yadav   SOUTH AFRICAN JOURNAL OF BOTANY

Comparative transcriptome analysis of arsenate and arsenite stresses in rice seedlings

(2008) Debasis Chakrabarty et al.   CHEMOSPHERE

Chromium-induced changes in ultramorphology and secondary metabolites of Phyllanthus amarus Schum & Thonn. – an hepatoprotective plant

(2008) Vartika Rai et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS