Transcriptome Profiling of Radish (Raphanus sativus L.) Root and Identification of Genes Involved in Response to Lead (Pb) Stress with Next Generation Sequencing

Transcriptomic profiling of the salt-stress response in the wild recretohalophyte Reaumuria trigyna

(2013) Zhen-hua Dang et al.   BMC GENOMICS

Designing a transcriptome next-generation sequencing project for a nonmodel plant species1

(2012) Susan R. Strickler et al.   AMERICAN JOURNAL OF BOTANY

Strategies for transcriptome analysis in nonmodel plants

(2012) Judson A. Ward et al.   AMERICAN JOURNAL OF BOTANY

Evaluation of reference genes for gene expression studies in radish (Raphanus sativus L.) using quantitative real-time PCR

(2012) Yuanyuan Xu et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Molecular mechanistic model of plant heavy metal tolerance

(2012) Ganesh Thapa et al.   BIOMETALS

De novo sequencing and analysis of root transcriptome using 454 pyrosequencing to discover putative genes associated with drought tolerance in Ammopiptanthus mongolicus

(2012) Yijun Zhou et al.   BMC GENOMICS

The molecular mechanism of zinc and cadmium stress response in plants

(2012) Ya-Fen Lin et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Application of High-Throughput Sequencing in Medicinal Plant Transcriptome Studies

(2012) Da-Cheng Hao et al.   DRUG DEVELOPMENT RESEARCH

Gene expression profiling of soybean leaves and roots under salt, saline–alkali and drought stress by high-throughput Illumina sequencing

(2012) Xiu-Duo Fan et al.   GENE

Mitogen-Activated Protein (MAP) Kinases in Plant Metal Stress: Regulation and Responses in Comparison to Other Biotic and Abiotic Stresses

(2012) Kelly Opdenakker et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Recent Molecular Advances on Downstream Plant Responses to Abiotic Stress

(2012) Sávio Pinho dos Reis et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The interaction of plant biotic and abiotic stresses: from genes to the field

(2012) N. J. Atkinson et al.   JOURNAL OF EXPERIMENTAL BOTANY

Growth, photosynthesis and antioxidant responses of endophyte infected and non-infected rice under lead stress conditions

(2012) Xuemei Li et al.   JOURNAL OF HAZARDOUS MATERIALS

Review of Pb availability and toxicity to plants in relation with metal speciation; role of synthetic and natural organic ligands

(2012) M. Shahid et al.   JOURNAL OF HAZARDOUS MATERIALS

Properties of lead deposits in cell walls of radish (Raphanus sativus) roots

(2012) Hiroshi Inoue et al.   JOURNAL OF PLANT RESEARCH

Transcriptional responses to drought stress in root and leaf of chickpea seedling

(2012) Xiansheng Wang et al.   MOLECULAR BIOLOGY REPORTS

Transcriptome analyses of Bactericera cockerelli adults in response to “Candidatus Liberibacter solanacearum” infection

(2012) Punya Nachappa et al.   MOLECULAR GENETICS AND GENOMICS

Deep sequencing analysis of the transcriptomes of peanut aerial and subterranean young pods identifies candidate genes related to early embryo abortion

(2012) Xiaoping Chen et al.   PLANT BIOTECHNOLOGY JOURNAL

De novo transcriptome sequencing of Momordica cochinchinensis to identify genes involved in the carotenoid biosynthesis

(2012) Tae Kyung Hyun et al.   PLANT MOLECULAR BIOLOGY

De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae)

(2012) Xue-Mei Zhang et al.   PLoS One

Identification of Differentially-Expressed Genes Associated with Pistil Abortion in Japanese Apricot by Genome-Wide Transcriptional Analysis

(2012) Ting Shi et al.   PLoS One

Transcript profiling during salt stress of young cotton (Gossypium hirsutum) seedlings via Solexa sequencing

(2011) Gang Wang et al.   ACTA PHYSIOLOGIAE PLANTARUM

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds

(2011) Cheng-Ying Shi et al.   BMC GENOMICS

A Review on Mechanisms of Plant Tolerance and Role of Transgenic Plants in Environmental Clean-up

(2011) Chandra Shekhar Seth   BOTANICAL REVIEW

Effects of lead on the growth, lead accumulation and physiological responses of Pluchea sagittalis

(2011) Liana Veronica Rossato et al.   ECOTOXICOLOGY

Glutathione plays a role in protecting leaves of Salvinia minima from Pb2+ damage associated with changes in the expression of SmGS genes and increased activity of GS

(2011) Neyi E. Estrella-Gómez et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Lead contamination and its potential sources in vegetables and soils of Fujian, China

(2011) Zhi-Yong Huang et al.   ENVIRONMENTAL GEOCHEMISTRY AND HEALTH

Human health risk assessment of lead pollution in atmospheric deposition in Baoshan District, Shanghai

(2011) Yuanyuan Chen et al.   ENVIRONMENTAL GEOCHEMISTRY AND HEALTH

Heavy metal accumulation in vegetables grown in a long-term wastewater-irrigated agricultural land of tropical India

(2011) N. Gupta et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Advances in Omics and Bioinformatics Tools for Systems Analyses of Plant Functions

(2011) K. Mochida et al.   PLANT AND CELL PHYSIOLOGY

Transcriptome Profiling of Dehydration Stress in the Chinese Cabbage (Brassica rapa L. ssp. pekinensis) by Tag Sequencing

(2011) Shuancang Yu et al.   PLANT MOLECULAR BIOLOGY REPORTER

Next generation sequencing has lower sequence coverage and poorer SNP-detection capability in the regulatory regions

(2011) Weixin Wang et al.   Scientific Reports

The cell wall in plant cell response to trace metals: polysaccharide remodeling and its role in defense strategy

(2010) Magdalena Krzesłowska   ACTA PHYSIOLOGIAE PLANTARUM

Spatial regulation of cell-wall structure in response to heavy metal stress: cadmium-induced alteration of the methyl-esterification pattern of homogalacturonans

(2010) Olfa Douchiche et al.   ANNALS OF BOTANY

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

Lead disturbs microtubule organization in the root meristem of Zea mays

(2010) Soon-Ok Eun et al.   PHYSIOLOGIA PLANTARUM

Characterization of Transcriptional Complexity during Berry Development in Vitis vinifera Using RNA-Seq

(2010) S. Zenoni et al.   PLANT PHYSIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Next is now: new technologies for sequencing of genomes, transcriptomes, and beyond

(2009) Ryan Lister et al.   CURRENT OPINION IN PLANT BIOLOGY

Transcriptional profiling of Arabidopsis seedlings in response to heavy metal lead (Pb)

(2009) Tie Liu et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Lead accumulation in different Chinese cabbage cultivars and screening for pollution-safe cultivars

(2009) Weitao Liu et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

The detoxification of lead in Sedum alfredii H. is not related to phytochelatins but the glutathione

(2009) D.K. Gupta et al.   JOURNAL OF HAZARDOUS MATERIALS

Heavy metals toxicity in plants: An overview on the role of glutathione and phytochelatins in heavy metal stress tolerance of plants

(2009) S.K. Yadav   SOUTH AFRICAN JOURNAL OF BOTANY

Next-generation sequencing technologies and their implications for crop genetics and breeding

(2009) Rajeev K. Varshney et al.   TRENDS IN BIOTECHNOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Total concentrations and speciation of heavy metals in municipal sludge from Changsha, Zhuzhou and Xiangtan in middle-south region of China

(2008) Ming Chen et al.   JOURNAL OF HAZARDOUS MATERIALS

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH