Similar Microbial Communities Found on Two Distant Seafloor Basalts

New Insight into Microbial Iron Oxidation as Revealed by the Proteomic Profile of an Obligate Iron-Oxidizing Chemolithoautotroph

(2015) Roman A. Barco et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Carbon fixation by basalt-hosted microbial communities

(2015) Beth N. Orcutt et al.   Frontiers in Microbiology

Extracellular Enzyme Activity and Microbial Diversity Measured on Seafloor Exposed Basalts from Loihi Seamount Indicate the Importance of Basalts to Global Biogeochemical Cycling

(2014) Myrna E. Jacobson Meyers et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

(2014) Erik R. Hawley et al.   Standards in Genomic Sciences

Molecular biological and isotopic biogeochemical prognoses of the nitrification-driven dynamic microbial nitrogen cycle in hadopelagic sediments

(2013) Takuro Nunoura et al.   ENVIRONMENTAL MICROBIOLOGY

Mineralogy Drives Bacterial Biogeography of Hydrothermally Inactive Seafloor Sulfide Deposits

(2013) Brandy M. Toner et al.   GEOMICROBIOLOGY JOURNAL

Nitrogen cycling driven by organic matter export in the South Pacific oxygen minimum zone

(2013) Tim Kalvelage et al.   Nature Geoscience

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Diversity, Physiology, and Niche Differentiation of Ammonia-Oxidizing Archaea

(2012) Roland Hatzenpichler   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mtr extracellular electron-transfer pathways in Fe(III)-reducing or Fe(II)-oxidizing bacteria: a genomic perspective

(2012) Liang Shi et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Mimicking the oxygen minimum zones: stimulating interaction of aerobic archaeal and anaerobic bacterial ammonia oxidizers in a laboratory-scale model system

(2012) Jia Yan et al.   ENVIRONMENTAL MICROBIOLOGY

Methylophaga nitratireducenticrescens sp. nov. and Methylophaga frappieri sp. nov., isolated from the biofilm of the methanol-fed denitrification system treating the seawater at the Montreal Biodome

(2012) C. Villeneuve et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Diversity, abundance and expression of nitrite reductase (nirK)-like genes in marine thaumarchaea

(2012) Marie B Lund et al.   ISME Journal

Metagenomic Analysis of a Southern Maritime Antarctic Soil

(2012) David A. Pearce et al.   Frontiers in Microbiology

Biodiversity and Emerging Biogeography of the Neutrophilic Iron-Oxidizing Zetaproteobacteria

(2011) Sean M. McAllister et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Novel methylotrophic isolates from lake sediment, description of Methylotenera versatilis sp. nov. and emended description of the genus Methylotenera

(2011) M. G. Kalyuzhnaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Metagenomics of the subsurface Brazos-Trinity Basin (IODP site 1320): comparison with other sediment and pyrosequenced metagenomes

(2011) Jennifer F Biddle et al.   ISME Journal

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

(2011) K. D. Pruitt et al.   NUCLEIC ACIDS RESEARCH

Mariprofundus ferrooxydans PV-1 the First Genome of a Marine Fe(II) Oxidizing Zetaproteobacterium

(2011) Esther Singer et al.   PLoS One

Nitrososphaera viennensis, an ammonia oxidizing archaeon from soil

(2011) M. Tourna et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Methanocaldococcus villosus sp. nov., a heavily flagellated archaeon that adheres to surfaces and forms cell-cell contacts

(2010) A. Bellack et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Multiple displacement amplification compromises quantitative analysis of metagenomes

(2010) Suzan Yilmaz et al.   NATURE METHODS

Potential for Iron-reduction and Iron-cycling in Iron Oxyhydroxide-rich Microbial Mats at Loihi Seamount

(2009) David Emerson   GEOMICROBIOLOGY JOURNAL

A seafloor microbial biome hosted within incipient ferromanganese crusts

(2009) A. S. Templeton et al.   Nature Geoscience

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS

Integrated Fe- and S-isotope study of seafloor hydrothermal vents at East Pacific Rise 9–10°N

(2008) O ROUXEL et al.   CHEMICAL GEOLOGY

The diversity and abundance of bacteria inhabiting seafloor lavas positively correlate with rock alteration

(2008) Cara M. Santelli et al.   ENVIRONMENTAL MICROBIOLOGY

Enumeration of Archaea and Bacteria in seafloor basalt using real-time quantitative PCR and fluorescence microscopy

(2008) Jørn Einen et al.   FEMS MICROBIOLOGY LETTERS

Prokaryotic diversity, distribution and insights into their role in biogeochemical cycling in marine basalts

(2008) Olivia U Mason et al.   ISME Journal

Allochromatium vinosum DsrC: Solution-State NMR Structure, Redox Properties, and Interaction with DsrEFH, a Protein Essential for Purple Sulfur Bacterial Sulfur Oxidation

(2008) John R. Cort et al.   JOURNAL OF MOLECULAR BIOLOGY

Abundance and diversity of microbial life in ocean crust

(2008) Cara M. Santelli et al.   NATURE