Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

Enzymes involved in the anaerobic oxidation of n-alkanes: from methane to long-chain paraffins

(2013) Amy V. Callaghan   Frontiers in Microbiology

Metagenomic analysis and metabolite profiling of deep–sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

(2013) Nikole E. Kimes et al.   Frontiers in Microbiology

Evaluating bacterial community structures in oil collected from the sea surface and sediment in the northern Gulf of Mexico after theDeepwater Horizonoil spill

(2013) Zhanfei Liu et al.   MicrobiologyOpen

Anaerobic methane oxidation in metalliferous hydrothermal sediments: influence on carbon flux and decoupling from sulfate reduction

(2012) Scott D. Wankel et al.   ENVIRONMENTAL MICROBIOLOGY

Characterization of the anaerobic microbial community in oil-polluted subtidal sediments: aromatic biodegradation potential after thePrestigeoil spill

(2012) Alejandro Acosta-González et al.   ENVIRONMENTAL MICROBIOLOGY

Integrated metagenomic and metaproteomic analyses of an ANME-1-dominated community in marine cold seep sediments

(2012) Runar Stokke et al.   ENVIRONMENTAL MICROBIOLOGY

Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill

(2012) Olivia U Mason et al.   ISME Journal

Zero-valent sulphur is a key intermediate in marine methane oxidation

(2012) Jana Milucka et al.   NATURE

Microbial Community Analysis of a Coastal Salt Marsh Affected by the Deepwater Horizon Oil Spill

(2012) Melanie J. Beazley et al.   PLoS One

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

A metagenomic study of methanotrophic microorganisms in Coal Oil Point seep sediments

(2011) Othilde Håvelsrud et al.   BMC MICROBIOLOGY

Anaerobic oxidation of methane with sulfate: on the reversibility of the reactions that are catalyzed by enzymes also involved in methanogenesis from CO2

(2011) Rudolf K Thauer   CURRENT OPINION IN MICROBIOLOGY

Microbial gene functions enriched in the Deepwater Horizon deep-sea oil plume

(2011) Zhenmei Lu et al.   ISME Journal

IMG/M: the integrated metagenome data management and comparative analysis system

(2011) V. M. Markowitz et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Natural gas and temperature structured a microbial community response to the Deepwater Horizon oil spill

(2011) M. C. Redmond et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen

(2011) M. Hess et al.   SCIENCE

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Anaerobic Oxidation of Methane at a Marine Methane Seep in a Forearc Sediment Basin off Sumatra, Indian Ocean

(2011) Michael Siegert et al.   Frontiers in Microbiology

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

The mystery of the missing oil plume

(2010) Amanda Mascarelli   NATURE

Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

(2010) Katharina F. Ettwig et al.   NATURE

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Spatial Structure and Activity of Sedimentary Microbial Communities Underlying a Beggiatoa spp. Mat in a Gulf of Mexico Hydrocarbon Seep

(2010) Karen G. Lloyd et al.   PLoS One

Deep-Sea Oil Plume Enriches Indigenous Oil-Degrading Bacteria

(2010) Terry C. Hazen et al.   SCIENCE

Bacterial Communities from Shoreline Environments (Costa da Morte, Northwestern Spain) Affected by the Prestige Oil Spill

(2009) J. Alonso-Gutierrez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Manganese- and Iron-Dependent Marine Methane Oxidation

(2009) E. J. Beal et al.   SCIENCE

The minimum information about a genome sequence (MIGS) specification

(2008) Dawn Field et al.   NATURE BIOTECHNOLOGY