Programmable chemical reaction networks: emulating regulatory functions in living cells using a bottom-up approach

Rational design of functional and tunable oscillating enzymatic networks

(2015) Sergey N. Semenov et al.   Nature Chemistry

Threshold Sensing through a Synthetic Enzymatic Reaction-Diffusion Network

(2014) Sergey N. Semenov et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Paper-Based Synthetic Gene Networks

(2014) Keith Pardee et al.   CELL

Diversity in the dynamical behaviour of a compartmentalized programmable biochemical oscillator

(2014) Maximilian Weitz et al.   Nature Chemistry

Synthetic circuit for exact adaptation and fold-change detection

(2014) Jongmin Kim et al.   NUCLEIC ACIDS RESEARCH

Programmable on-chip DNA compartments as artificial cells

(2014) E. Karzbrun et al.   SCIENCE

Integrating artificial with natural cells to translate chemical messages that direct E. coli behaviour

(2014) Roberta Lentini et al.   Nature Communications

Automated Design of Programmable Enzyme-Driven DNA Circuits

(2014) Hendrik W. H. van Roekel et al.   ACS Synthetic Biology

Ultrasensitivity by Molecular Titration in Spatially Propagating Enzymatic Reactions

(2013) Sergey N. Semenov et al.   BIOPHYSICAL JOURNAL

Chemo-Mechanically Regulated Oscillation of an Enzymatic Reaction

(2013) Ximin He et al.   CHEMISTRY OF MATERIALS

Spatial Waves in Synthetic Biochemical Networks

(2013) Adrien Padirac et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Design Principles of Regulatory Networks: Searching for the Molecular Algorithms of the Cell

(2013) Wendell A. Lim et al.   MOLECULAR CELL

Pattern transformation with DNA circuits

(2013) Steven M. Chirieleison et al.   Nature Chemistry

Implementation of cell-free biological networks at steady state

(2013) H. Niederholtmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Predator–Prey Molecular Ecosystems

(2012) Teruo Fujii et al.   ACS Nano

pH Wave-Front Propagation in the Urea-Urease Reaction

(2012) Magdalena M. Wrobel et al.   BIOPHYSICAL JOURNAL

Bottom-up construction of in vitro switchable memories

(2012) A. Padirac et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic in vitro transcriptional oscillators

(2011) J. Kim et al.   Molecular Systems Biology

Programming an in vitro DNA oscillator using a molecular networking strategy

(2011) K. Montagne et al.   Molecular Systems Biology

Timing molecular motion and production with a synthetic transcriptional clock

(2011) E. Franco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Measurement of Protein−Ligand Binding Constants from Reaction-Diffusion Concentration Profiles

(2010) Yanhu Wei et al.   ANALYTICAL CHEMISTRY

A Spatially Propagating Biochemical Reaction

(2010) Xiaoli Liao et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Reaction-Diffusion Systems in Intracellular Molecular Transport and Control

(2010) Siowling Soh et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Engineered biological nanofactories trigger quorum sensing response in targeted bacteria

(2010) Rohan Fernandes et al.   Nature Nanotechnology

Multiple modes of interconverting dynamic pattern formation by bacterial cell division proteins

(2010) V. Ivanov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Synthetic biology of minimal systems

(2009) Petra Schwille et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

An Experimental Design Method Leading to Chemical Turing Patterns

(2009) J. Horvath et al.   SCIENCE

Dynamical Quorum Sensing and Synchronization in Large Populations of Chemical Oscillators

(2009) A. F. Taylor et al.   SCIENCE

Diffusively Coupled Chemical Oscillators in a Microfluidic Assembly

(2008) Masahiro Toiya et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Self-organization in cell biology: a brief history

(2008) Eric Karsenti   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Feedback Loops Shape Cellular Signals in Space and Time

(2008) O. Brandman et al.   SCIENCE

Spatial Regulators for Bacterial Cell Division Self-Organize into Surface Waves in Vitro

(2008) M. Loose et al.   SCIENCE

Systems chemistry

(2007) R. Frederick Ludlow et al.   CHEMICAL SOCIETY REVIEWS