Using informative Multinomial-Dirichlet prior in a t-mixture with reversible jump estimation of nucleosome positions for genome-wide profiling

PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

(2014) Anton Polishko et al.   BMC BIOINFORMATICS

Modeling nucleosome position distributions from experimental nucleosome positioning maps

(2013) Robert Schöpflin et al.   BIOINFORMATICS

NORMAL: accurate nucleosome positioning using a modified Gaussian mixture model

(2012) A. Polishko et al.   BIOINFORMATICS

nucleR: a package for non-parametric nucleosome positioning

(2011) O. Flores et al.   BIOINFORMATICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

PICS: Probabilistic Inference for ChIP-seq

(2010) Xuekui Zhang et al.   BIOMETRICS

Predicting nucleosome positioning using a duration Hidden Markov Model

(2010) Liqun Xi et al.   BMC BIOINFORMATICS

Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans

(2010) Kaifu Chen et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Computation for ChIP-seq and RNA-seq studies

(2009) Shirley Pepke et al.   NATURE METHODS

Chromatin state maps: new technologies, new insights

(2008) Eric M Mendenhall et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT