A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis

MicL, a new  E-dependent sRNA, combats envelope stress by repressing synthesis of Lpp, the major outer membrane lipoprotein

(2014) M. S. Guo et al.   GENES & DEVELOPMENT

Quantitative flux analysis reveals folate-dependent NADPH production

(2014) Jing Fan et al.   NATURE

Impact of Hfq on the Bacillus subtilis Transcriptome

(2014) Hermann Hämmerle et al.   PLoS One

Bacterial Nitric Oxide Extends the Lifespan of C. elegans

(2013) Ivan Gusarov et al.   CELL

The ResD Response Regulator, through Functional Interaction with NsrR and Fur, Plays Three Distinct Roles in Bacillus subtilis Transcriptional Control

(2013) B. Henares et al.   JOURNAL OF BACTERIOLOGY

Methicillin-resistantStaphylococcus aureusBacterial Nitric-oxide Synthase Affects Antibiotic Sensitivity and Skin Abscess Development

(2013) Nina M. van Sorge et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

Comparative genomics boosts target prediction for bacterial small RNAs

(2013) P. R. Wright et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Staphylococcus aureus SrrAB Two-Component System Promotes Resistance to Nitrosative Stress and Hypoxia

(2013) T. L. Kinkel et al.   mBio

RNA-Mediated Regulation in Pathogenic Bacteria

(2013) I. Caldelari et al.   Cold Spring Harbor Perspectives in Medicine

DEAD-Box RNA Helicases in Bacillus subtilis Have Multiple Functions and Act Independently from Each Other

(2012) M. Lehnik-Habrink et al.   JOURNAL OF BACTERIOLOGY

A Global Investigation of the Bacillus subtilis Iron-Sparing Response Identifies Major Changes in Metabolism

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

The FsrA sRNA and FbpB Protein Mediate the Iron-Dependent Induction of the Bacillus subtilis LutABC Iron-Sulfur-Containing Oxidases

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

RNA snap ™: a rapid, quantitative and inexpensive, method for isolating total RNA from bacteria

(2012) Mark B. Stead et al.   NUCLEIC ACIDS RESEARCH

SR1—a small RNA with two remarkably conserved functions

(2012) Matthias Gimpel et al.   NUCLEIC ACIDS RESEARCH

Genome-wide identification of genes directly regulated by the pleiotropic transcription factor Spx in Bacillus subtilis

(2012) Tatiana Rochat et al.   NUCLEIC ACIDS RESEARCH

The Expression of Small Regulatory RNAs in Clinical Samples Reflects the Different Life Styles of Staphylococcus aureus in Colonization vs. Infection

(2012) Juan Song et al.   PLoS One

Comparative label-free LC-MS/MS analysis of colorectal adenocarcinoma and metastatic cells treated with 5-fluorouracil

(2012) Kerry M. Bauer et al.   PROTEOMICS

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAs

(2012) Sylvain Durand et al.   PLoS Genetics

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

RNApredator: fast accessibility-based prediction of sRNA targets

(2011) Florian Eggenhofer et al.   NUCLEIC ACIDS RESEARCH

CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers

(2011) Antonin Marchais et al.   RNA Biology

Bacterial Nitric Oxide Synthases

(2010) Brian R. Crane et al.   Annual Review of Biochemistry

Integrating anaerobic/aerobic sensing and the general stress response through the ArcZ small RNA

(2010) Pierre Mandin et al.   EMBO JOURNAL

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

Stabilization of Clostridium perfringens collagenase mRNA by VR-RNA-dependent cleavage in 5′ leader sequence

(2010) Nozomu Obana et al.   MOLECULAR MICROBIOLOGY

The group A Streptococcus small regulatory RNA FasX enhances streptokinase activity by increasing the stability of the ska mRNA transcript

(2010) Esmeralda Ramirez-Peña et al.   MOLECULAR MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Regulation of the small regulatory RNA MicA by ribonuclease III: a target-dependent pathway

(2010) Sandra C. Viegas et al.   NUCLEIC ACIDS RESEARCH

Positive regulation by small RNAs and the role of Hfq

(2010) T. Soper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis

(2009) Karen Shahbabian et al.   EMBO JOURNAL

Specific and pleiotropic patterns of mRNA regulation by ArcZ, a conserved, Hfq-dependent small RNA

(2009) Kai Papenfort et al.   MOLECULAR MICROBIOLOGY

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

(2009) Verena Pfeiffer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Endogenous Nitric Oxide Protects Bacteria Against a Wide Spectrum of Antibiotics

(2009) I. Gusarov et al.   SCIENCE

A unified approach to false discovery rate estimation

(2008) Korbinian Strimmer   BMC BIOINFORMATICS

Spx mediates oxidative stress regulation of the methionine sulfoxide reductases operon in Bacillus subtilis

(2008) CongHui You et al.   BMC MICROBIOLOGY

Nitric Oxide Stress Induces Different Responses but Mediates Comparable Protein Thiol Protection in Bacillus subtilis and Staphylococcus aureus

(2008) F. Hochgrafe et al.   JOURNAL OF BACTERIOLOGY

Bacillus anthracis-derived nitric oxide is essential for pathogen virulence and survival in macrophages

(2008) K. Shatalin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

(2008) A. Gaballa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA