Impact of Hfq on the Bacillus subtilis Transcriptome

Target evaluation of the non-coding csRNAs reveals a link of the two-component regulatory system CiaRH to competence control inStreptococcus pneumoniae R6

(2013) Anke Schnorpfeil et al.   MOLECULAR MICROBIOLOGY

Association of RNAs with Bacillus subtilis Hfq

(2013) Michael Dambach et al.   PLoS One

Impact of Hfq on Global Gene Expression and Intracellular Survival in Brucella melitensis

(2013) Mingquan Cui et al.   PLoS One

Lack of interchangeability of Hfq-like proteins

(2012) Tatiana Rochat et al.   BIOCHIMIE

The FsrA sRNA and FbpB Protein Mediate the Iron-Dependent Induction of the Bacillus subtilis LutABC Iron-Sulfur-Containing Oxidases

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

BsrG/SR4 from Bacillus subtilis- the first temperature-dependent type I toxin-antitoxin system

(2012) Natalie Jahn et al.   MOLECULAR MICROBIOLOGY

Type I toxin-antitoxin systems inBacillus subtilis

(2012) Sylvain Durand et al.   RNA Biology

Identification of 88 regulatory small RNAs in the TIGR4 strain of the human pathogen Streptococcus pneumoniae

(2012) P. Acebo et al.   RNA

Control of Virulence by Small RNAs in Streptococcus pneumoniae

(2012) Beth Mann et al.   PLoS Pathogens

ViennaRNA Package 2.0

(2011) Ronny Lorenz et al.   Algorithms for Molecular Biology

Fast accessibility-based prediction of RNA–RNA interactions

(2011) Hakim Tafer et al.   BIOINFORMATICS

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Structural insights into the dynamics and function of the C-terminus of the E. coli RNA chaperone Hfq

(2011) Mads Beich-Frandsen et al.   NUCLEIC ACIDS RESEARCH

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq

(2011) Tatsuhiko Someya et al.   NUCLEIC ACIDS RESEARCH

A Small RNA Controls Expression of the Chitinase ChiA in Listeria monocytogenes

(2011) Jesper S. Nielsen et al.   PLoS One

Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays

(2010) Ranjit Kumar et al.   BMC GENOMICS

C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in Riboregulation

(2010) Anders Steno Olsen et al.   JOURNAL OF MOLECULAR BIOLOGY

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Hfq Is a Global Regulator That Controls the Pathogenicity of Staphylococcus aureus

(2010) Yu Liu et al.   PLoS One

Staphylococcus aureus RNAIII Binds to Two Distant Regions of coa mRNA to Arrest Translation and Promote mRNA Degradation

(2010) Clément Chevalier et al.   PLoS Pathogens

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Deep RNA sequencing of L. monocytogenes reveals overlapping and extensive stationary phase and sigma B-dependent transcriptomes, including multiple highly transcribed noncoding RNAs

(2009) Haley F Oliver et al.   BMC GENOMICS

Identification and Characterization of Noncoding Small RNAs in Streptococcus pneumoniae Serotype 2 Strain D39

(2009) H.-C. T. Tsui et al.   JOURNAL OF BACTERIOLOGY

The transcriptionally active regions in the genome ofBacillus subtilis

(2009) Simon Rasmussen et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes

(2009) Jesper Sejrup Nielsen et al.   NUCLEIC ACIDS RESEARCH

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Deciding fate in adverse times: Sporulation and competence inBacillus subtilis

(2009) Daniel Schultz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the facultative requirement of the bacterial RNA chaperone, Hfq

(2009) Ambre Jousselin et al.   TRENDS IN MICROBIOLOGY

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Stochastic switching to competence

(2008) Madeleine Leisner et al.   CURRENT OPINION IN MICROBIOLOGY

Identification of a  B-Dependent Small Noncoding RNA in Listeria monocytogenes

(2008) J. S. Nielsen et al.   JOURNAL OF BACTERIOLOGY

Structure and functional properties of theBacillus subtilistranscriptional repressor Rex

(2008) Ellen Wang et al.   MOLECULAR MICROBIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

(2008) A. Gaballa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics