Association of RNAs with Bacillus subtilis Hfq

An atlas of Hfq-bound transcripts reveals 3′ UTRs as a genomic reservoir of regulatory small RNAs

(2012) Yanjie Chao et al.   EMBO JOURNAL

The FsrA sRNA and FbpB Protein Mediate the Iron-Dependent Induction of the Bacillus subtilis LutABC Iron-Sulfur-Containing Oxidases

(2012) G. T. Smaldone et al.   JOURNAL OF BACTERIOLOGY

BsrG/SR4 from Bacillus subtilis- the first temperature-dependent type I toxin-antitoxin system

(2012) Natalie Jahn et al.   MOLECULAR MICROBIOLOGY

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Three Essential Ribonucleases—RNase Y, J1, and III—Control the Abundance of a Majority of Bacillus subtilis mRNAs

(2012) Sylvain Durand et al.   PLoS Genetics

Insights into Metalloregulation by M-box Riboswitch RNAs via Structural Analysis of Manganese-Bound Complexes

(2011) Arati Ramesh et al.   JOURNAL OF MOLECULAR BIOLOGY

Regulation by Small RNAs in Bacteria: Expanding Frontiers

(2011) Gisela Storz et al.   MOLECULAR CELL

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

Dynamic competition of DsrA and rpoS fragments for the proximal binding site of Hfq as a means for efficient annealing

(2011) Wonseok Hwang et al.   NUCLEIC ACIDS RESEARCH

Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq

(2011) Tatsuhiko Someya et al.   NUCLEIC ACIDS RESEARCH

Rapid binding and release of Hfq from ternary complexes during RNA annealing

(2011) Julia F. Hopkins et al.   NUCLEIC ACIDS RESEARCH

CsfG, a sporulation-specific, small non-coding RNA highly conserved in endospore formers

(2011) Antonin Marchais et al.   RNA Biology

Regulatory RNA in Bacterial Pathogens

(2010) Kai Papenfort et al.   Cell Host & Microbe

The role of Hfq in bacterial pathogens

(2010) Yanjie Chao et al.   CURRENT OPINION IN MICROBIOLOGY

RNAs actively cycle on the Sm-like protein Hfq

(2010) A. Fender et al.   GENES & DEVELOPMENT

Small Genes under Sporulation Control in the Bacillus subtilis genome

(2010) M. Schmalisch et al.   JOURNAL OF BACTERIOLOGY

C-Terminally Truncated Derivatives of Escherichia coli Hfq Are Proficient in Riboregulation

(2010) Anders Steno Olsen et al.   JOURNAL OF MOLECULAR BIOLOGY

A minimal base-pairing region of a bacterial small RNA SgrS required for translational repression of ptsG mRNA

(2010) Kimika Maki et al.   MOLECULAR MICROBIOLOGY

Experimental discovery of small RNAs in Staphylococcus aureus reveals a riboregulator of central metabolism

(2010) Chantal Bohn et al.   NUCLEIC ACIDS RESEARCH

Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families

(2010) Elizabeth M. Fozo et al.   NUCLEIC ACIDS RESEARCH

Identification of regulatory RNAs in Bacillus subtilis

(2010) Irnov Irnov et al.   NUCLEIC ACIDS RESEARCH

Positive regulation by small RNAs and the role of Hfq

(2010) T. Soper et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep sequencing of Salmonella RNA associated with heterologous Hfq proteins in vivo reveals small RNAs as a major target class and identifies RNA processing phenotypes

(2010) Alexandra Sittka et al.   RNA Biology

Magnesium-sensing riboswitches in bacteria

(2010) Arati Ramesh et al.   RNA Biology

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Regulatory RNAs in Bacteria

(2009) Lauren S. Waters et al.   CELL

An overview of RNAs with regulatory functions in gram-positive bacteria

(2009) Pascale Romby et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Experimental approaches for the discovery and characterization of regulatory small RNA

(2009) Cynthia Mira Sharma et al.   CURRENT OPINION IN MICROBIOLOGY

Expanding roles for metabolite-sensing regulatory RNAs

(2009) Michael D Dambach et al.   CURRENT OPINION IN MICROBIOLOGY

CodY Activates Transcription of a Small RNA in Bacillus subtilis

(2009) H. Preis et al.   JOURNAL OF BACTERIOLOGY

The Acinetobacter baylyi hfq Gene Encodes a Large Protein with an Unusual C Terminus

(2009) D. Schilling et al.   JOURNAL OF BACTERIOLOGY

The transcriptionally active regions in the genome ofBacillus subtilis

(2009) Simon Rasmussen et al.   MOLECULAR MICROBIOLOGY

The Listeria transcriptional landscape from saprophytism to virulence

(2009) Alejandro Toledo-Arana et al.   NATURE

Coding sequence targeting by MicC RNA reveals bacterial mRNA silencing downstream of translational initiation

(2009) Verena Pfeiffer et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Defining a role for Hfq in Gram-positive bacteria: evidence for Hfq-dependent antisense regulation in Listeria monocytogenes

(2009) Jesper Sejrup Nielsen et al.   NUCLEIC ACIDS RESEARCH

A search for small noncoding RNAs in Staphylococcus aureus reveals a conserved sequence motif for regulation

(2009) Thomas Geissmann et al.   NUCLEIC ACIDS RESEARCH

Global Systems-Level Analysis of Hfq and SmpB Deletion Mutants in Salmonella: Implications for Virulence and Global Protein Translation

(2009) Charles Ansong et al.   PLoS One

Structure of Escherichia coli Hfq bound to polyriboadenylate RNA

(2009) T. M. Link et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel small RNA-encoding genes in the intergenic regions of Bacillus subtilis

(2008) Shinichi Saito et al.   GENE

Moraxella catarrhalis Expresses an Unusual Hfq Protein

(2008) A. S. Attia et al.   INFECTION AND IMMUNITY

Extracytoplasmic Function σ Factors Regulate Expression of theBacillus subtilis yabEGene via acis-Acting Antisense RNA

(2008) Warawan Eiamphungporn et al.   JOURNAL OF BACTERIOLOGY

Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors

(2008) C. L. Turnbough et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Small Toxic Proteins and the Antisense RNAs That Repress Them

(2008) E. M. Fozo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Detection of small RNAs in Pseudomonas aeruginosa by RNomics and structure-based bioinformatic tools

(2008) E. Sonnleitner et al.   MICROBIOLOGY-SGM

Small RNA Binding to 5′ mRNA Coding Region Inhibits Translational Initiation

(2008) Marie Bouvier et al.   MOLECULAR CELL

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

Rfam: updates to the RNA families database

(2008) P. P. Gardner et al.   NUCLEIC ACIDS RESEARCH

The Bacillus subtilis iron-sparing response is mediated by a Fur-regulated small RNA and three small, basic proteins

(2008) A. Gaballa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Deep Sequencing Analysis of Small Noncoding RNA and mRNA Targets of the Global Post-Transcriptional Regulator, Hfq

(2008) Alexandra Sittka et al.   PLoS Genetics