The Global Regulatory Architecture of Transcription during the Caulobacter Cell Cycle

The CtrA phosphorelay integrates differentiation and communication in the marine alphaproteobacterium Dinoroseobacter shibae

(2014) Hui Wang et al.   BMC GENOMICS

The functions of DNA methylation by CcrM in Caulobacter crescentus: a global approach

(2014) Diego Gonzalez et al.   NUCLEIC ACIDS RESEARCH

Correction of the Caulobacter crescentus NA1000 Genome Annotation

(2014) Bert Ely et al.   PLoS One

Global analysis of cell cycle gene expression of the legume symbiontSinorhizobium meliloti

(2014) Nicole J. De Nisco et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Host plant peptides elicit a transcriptional response to control theSinorhizobium meliloticell cycle during symbiosis

(2014) Jon Penterman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Computational and Genetic Reduction of a Cell Cycle to Its Simplest, Primordial Components

(2014) Seán M. Murray et al.   PLOS BIOLOGY

The Coding and Noncoding Architecture of the Caulobacter crescentus Genome

(2014) Jared M. Schrader et al.   PLoS Genetics

A Cell Cycle and Nutritional Checkpoint Controlling Bacterial Surface Adhesion

(2014) Aretha Fiebig et al.   PLoS Genetics

Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution

(2013) Gang Fang et al.   BMC GENOMICS

Global mapping of transcription start sites and promoter motifs in the symbiotic α-proteobacterium Sinorhizobium meliloti 1021

(2013) Jan-Philip Schlüter et al.   BMC GENOMICS

Phosphate Concentration and the Putative Sensor Kinase Protein CckA Modulate Cell Lysis and Release of the Rhodobacter capsulatus Gene Transfer Agent

(2013) A. B. Westbye et al.   JOURNAL OF BACTERIOLOGY

Regulated proteolysis of a transcription factor complex is critical to cell cycle progression inCaulobacter crescentus

(2013) Kasia G. Gora et al.   MOLECULAR MICROBIOLOGY

Global methylation state at base-pair resolution of the Caulobacter genome throughout the cell cycle

(2013) J. B. Kozdon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

DNA Binding of the Cell Cycle Transcriptional Regulator GcrA Depends on N6-Adenosine Methylation in Caulobacter crescentus and Other Alphaproteobacteria

(2013) Antonella Fioravanti et al.   PLoS Genetics

Analysis of the CtrA Pathway in Magnetospirillum Reveals an Ancestral Role in Motility in Alphaproteobacteria

(2012) S. E. Greene et al.   JOURNAL OF BACTERIOLOGY

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species

(2012) Omri Wurtzel et al.   Molecular Systems Biology

Antisense Transcription Is Pervasive but Rarely Conserved in Enteric Bacteria

(2012) R. Raghavan et al.   mBio

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

The Architecture and Conservation Pattern of Whole-Cell Control Circuitry

(2011) Harley H. McAdams et al.   JOURNAL OF MOLECULAR BIOLOGY

The Caulobacter crescentus chromosome replication origin evolved two classes of weak DnaA binding sites

(2011) James A. Taylor et al.   MOLECULAR MICROBIOLOGY

The essential genome of a bacterium

(2011) B. Christen et al.   Molecular Systems Biology

Hfq and its constellation of RNA

(2011) Jörg Vogel et al.   NATURE REVIEWS MICROBIOLOGY

A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide

(2011) Nour Sayed et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Regulation of chromosomal replication in Caulobacter crescentus

(2011) Justine Collier   PLASMID

The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis

(2010) Matteo Brilli et al.   BMC Systems Biology

CrfA, a Small Noncoding RNA Regulator of Adaptation to Carbon Starvation in Caulobacter crescentus

(2010) S. G. Landt et al.   JOURNAL OF BACTERIOLOGY

The Genetic Basis of Laboratory Adaptation in Caulobacter crescentus

(2010) M. E. Marks et al.   JOURNAL OF BACTERIOLOGY

RNase III Participates in GadY-Dependent Cleavage of the gadX-gadW mRNA

(2010) Jason A. Opdyke et al.   JOURNAL OF MOLECULAR BIOLOGY

A Cell-Type-Specific Protein-Protein Interaction Modulates Transcriptional Activity of a Master Regulator in Caulobacter crescentus

(2010) Kasia G. Gora et al.   MOLECULAR CELL

An antisense RNA that governs the expression kinetics of a multifunctional virulence gene

(2010) Eun-Jin Lee et al.   MOLECULAR MICROBIOLOGY

The primary transcriptome of the major human pathogen Helicobacter pylori

(2010) Cynthia M. Sharma et al.   NATURE

An essential transcription factor, SciP, enhances robustness of Caulobacter cell cycle regulation

(2010) M. H. Tan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Widespread Antisense Transcription in Escherichia coli

(2010) J. E. Dornenburg et al.   mBio

Bacterial Small RNA Regulators: Versatile Roles and Rapidly Evolving Variations

(2010) S. Gottesman et al.   Cold Spring Harbor Perspectives in Biology

Spatial regulation in Caulobacter crescentus

(2009) Martin Thanbichler   CURRENT OPINION IN MICROBIOLOGY

System-level design of bacterial cell cycle control

(2009) Harley H. McAdams et al.   FEBS LETTERS

CtrA, a Global Response Regulator, Uses a Distinct Second Category of Weak DNA Binding Sites for Cell Cycle Transcription Control in Caulobacter crescentus

(2009) W. Spencer et al.   JOURNAL OF BACTERIOLOGY

The transcription unit architecture of the Escherichia coli genome

(2009) Byung-Kwan Cho et al.   NATURE BIOTECHNOLOGY

MEME SUITE: tools for motif discovery and searching

(2009) T. L. Bailey et al.   NUCLEIC ACIDS RESEARCH

Transcriptome Complexity in a Genome-Reduced Bacterium

(2009) M. Guell et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

The dynamic interplay between a cell fate determinant and a lysozyme homolog drives the asymmetric division cycle of Caulobacter crescentus

(2008) S. K. Radhakrishnan et al.   GENES & DEVELOPMENT

Small non-coding RNAs in Caulobacter crescentus

(2008) Stephen G. Landt et al.   MOLECULAR MICROBIOLOGY

Architecture and inherent robustness of a bacterial cell-cycle control system

(2008) X. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA