Correction of the Caulobacter crescentus NA1000 Genome Annotation

Transcriptomic and phylogenetic analysis of a bacterial cell cycle reveals strong associations between gene co-expression and evolution

(2013) Gang Fang et al.   BMC GENOMICS

Reducing assembly complexity of microbial genomes with single-molecule sequencing

(2013) Sergey Koren et al.   GENOME BIOLOGY

Life Technologies promises $1,000 genome

(2012) Laura DeFrancesco   NATURE BIOTECHNOLOGY

BG7: A New Approach for Bacterial Genome Annotation Designed for Next Generation Sequencing Data

(2012) Pablo Pareja-Tobes et al.   PLoS One

An Integrative Method for Identifying the Over-Annotated Protein-Coding Genes in Microbial Genomes

(2011) J.-F. Yu et al.   DNA RESEARCH

The essential genome of a bacterium

(2011) B. Christen et al.   Molecular Systems Biology

RATT: Rapid Annotation Transfer Tool

(2011) Thomas D. Otto et al.   NUCLEIC ACIDS RESEARCH

Missing genes in the annotation of prokaryotic genomes

(2010) Andrew S Warren et al.   BMC BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

The Genetic Basis of Laboratory Adaptation in Caulobacter crescentus

(2010) M. E. Marks et al.   JOURNAL OF BACTERIOLOGY

Limitations of next-generation genome sequence assembly

(2010) Can Alkan et al.   NATURE METHODS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

RNA-Seq: a revolutionary tool for transcriptomics

(2008) Zhong Wang et al.   NATURE REVIEWS GENETICS

A Systematic Survey of Mini-Proteins in Bacteria and Archaea

(2008) Fengyu Wang et al.   PLoS One