Modularity of Protein Folds as a Tool for Template-Free Modeling of Structures

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

Frag’r’Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

(2014) Jaume Bonet et al.   BIOINFORMATICS

ArchDB 2014: structural classification of loops in proteins

(2013) Jaume Bonet et al.   NUCLEIC ACIDS RESEARCH

CASP10 results compared to those of previous CASP experiments

(2013) Andriy Kryshtafovych et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Modeling Proteins Using a Super-Secondary Structure Library and NMR Chemical Shift Information

(2013) Vilas Menon et al.   STRUCTURE

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Domain enhanced lookup time accelerated BLAST

(2012) Grzegorz M Boratyn et al.   Biology Direct

HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment

(2011) Michael Remmert et al.   NATURE METHODS

CASP9 target classification

(2011) Lisa N. Kinch et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

De novo protein structure prediction by dynamic fragment assembly and conformational space annealing

(2011) Juyong Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Improved predictions by Pcons.net using multiple templates

(2010) P. Larsson et al.   BIOINFORMATICS

New statistical potential for quality assessment of protein models and a survey of energy functions

(2010) Dmitry Rykunov et al.   BMC BIOINFORMATICS

Extending CATH: increasing coverage of the protein structure universe and linking structure with function

(2010) A. L. Cuff et al.   NUCLEIC ACIDS RESEARCH

Structural Characteristics of Novel Protein Folds

(2010) Narcis Fernandez-Fuentes et al.   PLoS Computational Biology

Protein Structure Prediction by Pro-Sp3-TASSER

(2009) Hongyi Zhou et al.   BIOPHYSICAL JOURNAL

Blind Test of Physics-Based Prediction of Protein Structures

(2009) M. Scott Shell et al.   BIOPHYSICAL JOURNAL

Nature of the protein universe

(2009) M. Levitt   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structure is three to ten times more conserved than sequence-A study of structural response in protein cores

(2009) Kristoffer Illergård et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima

(2009) Y. Zhang et al.   SCIENCE

Exploration of Uncharted Regions of the Protein Universe

(2009) Lukasz Jaroszewski et al.   PLOS BIOLOGY

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA