Frag’r’Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design

Computational Enzyme Design

(2013) Gert Kiss et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Understanding Protein–Protein Interactions Using Local Structural Features

(2013) Joan Planas-Iglesias et al.   JOURNAL OF MOLECULAR BIOLOGY

ArchDB 2014: structural classification of loops in proteins

(2013) Jaume Bonet et al.   NUCLEIC ACIDS RESEARCH

Emerging themes in the computational design of novel enzymes and protein-protein interfaces

(2012) Sagar D. Khare et al.   FEBS LETTERS

A Designed Point Mutant in Fis1 Disrupts Dimerization and Mitochondrial Fission

(2012) Jonathan P.B. Lees et al.   JOURNAL OF MOLECULAR BIOLOGY

Increased Diels-Alderase activity through backbone remodeling guided by Foldit players

(2012) Christopher B Eiben et al.   NATURE BIOTECHNOLOGY

Structural Analyses of Covalent Enzyme–Substrate Analog Complexes Reveal Strengths and Limitations of De Novo Enzyme Design

(2011) Ling Wang et al.   JOURNAL OF MOLECULAR BIOLOGY

Evolutionary Walk between (β/α)8 Barrels: Catalytic Migration from Triosephosphate Isomerase to Thiamin Phosphate Synthase

(2011) Gloria Saab-Rincón et al.   JOURNAL OF MOLECULAR BIOLOGY

Computation-Guided Backbone Grafting of a Discontinuous Motif onto a Protein Scaffold

(2011) M. L. Azoitei et al.   SCIENCE

Establishing wild-type levels of catalytic activity on natural and artificial (  )8-barrel protein scaffolds

(2009) J. Claren et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Alteration of enzyme specificity by computational loop remodeling and design

(2009) P. M. Murphy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

De Novo Computational Design of Retro-Aldol Enzymes

(2008) L. Jiang et al.   SCIENCE