Cellular-resolution connectomics: challenges of dense neural circuit reconstruction

Mapping brain circuitry with a light microscope

(2013) Pavel Osten et al.   NATURE METHODS

Imaging human connectomes at the macroscale

(2013) R Cameron Craddock et al.   NATURE METHODS

Computer Assisted Assembly of Connectomes from Electron Micrographs: Application to Caenorhabditis elegans

(2013) Meng Xu et al.   PLoS One

Computational methods and challenges for large-scale circuit mapping

(2012) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Different classes of input and output neurons reveal new features in microglomeruli of the adult Drosophila mushroom body calyx

(2012) Nancy J. Butcher et al.   JOURNAL OF COMPARATIVE NEUROLOGY

The Connectome of a Decision-Making Neural Network

(2012) T. A. Jarrell et al.   SCIENCE

The Geometric Structure of the Brain Fiber Pathways

(2012) V. J. Wedeen et al.   SCIENCE

Volume electron microscopy for neuronal circuit reconstruction

(2011) Kevin L Briggman et al.   CURRENT OPINION IN NEUROBIOLOGY

3D segmentation of SBFSEM images of neuropil by a graphical model over supervoxel boundaries

(2011) Bjoern Andres et al.   MEDICAL IMAGE ANALYSIS

Network anatomy and in vivo physiology of visual cortical neurons

(2011) Davi D. Bock et al.   NATURE

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

Transfection via whole-cell recording in vivo: bridging single-cell physiology, genetics and connectomics

(2011) Ede A Rancz et al.   NATURE NEUROSCIENCE

High-accuracy neurite reconstruction for high-throughput neuroanatomy

(2011) Moritz Helmstaedter et al.   NATURE NEUROSCIENCE

Automated Detection and Segmentation of Synaptic Contacts in Nearly Isotropic Serial Electron Microscopy Images

(2011) Anna Kreshuk et al.   PLoS One

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

Semi-automated reconstruction of neural circuits using electron microscopy

(2010) Dmitri B Chklovskii et al.   CURRENT OPINION IN NEUROBIOLOGY

Machines that learn to segment images: a crucial technology for connectomics

(2010) Viren Jain et al.   CURRENT OPINION IN NEUROBIOLOGY

Ssecrett and NeuroTrace: Interactive Visualization and Analysis Tools for Large-Scale Neuroscience Data Sets

(2010) Won-Ki Jeong et al.   IEEE COMPUTER GRAPHICS AND APPLICATIONS

Predicting protein structures with a multiplayer online game

(2010) Seth Cooper et al.   NATURE

Ultrastructural Analysis of Hippocampal Neuropil from the Connectomics Perspective

(2010) Yuriy Mishchenko et al.   NEURON

An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy

(2010) Albert Cardona et al.   PLOS BIOLOGY

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS

The human brain in numbers: a linearly scaled-up primate brain

(2009) Suzana Herculano-Houzel   Frontiers in Human Neuroscience

Equal numbers of neuronal and nonneuronal cells make the human brain an isometrically scaled-up primate brain

(2009) Frederico A.C. Azevedo et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Convolutional Networks Can Learn to Generate Affinity Graphs for Image Segmentation

(2009) Srinivas C. Turaga et al.   NEURAL COMPUTATION

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale

(2009) Jason W. Bohland et al.   PLoS Computational Biology

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

(2008) G. Knott et al.   JOURNAL OF NEUROSCIENCE

Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs

(2008) Yuriy Mishchenko   JOURNAL OF NEUROSCIENCE METHODS

Galaxy Zoo: the large-scale spin statistics of spiral galaxies in the Sloan Digital Sky Survey★

(2008) Kate Land et al.   MONTHLY NOTICES OF THE ROYAL ASTRONOMICAL SOCIETY