Immunoinformatics and epitope prediction in the age of genomic medicine
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Immunoinformatics and epitope prediction in the age of genomic medicine
Authors
Keywords
Immunoinformatics, Bioinformatics, Next-generation sequencing, Machine learning, HLA, Vaccine design, Personalized medicine
Journal
Genome Medicine
Volume 7, Issue 1, Pages -
Publisher
Springer Nature
Online
2015-11-20
DOI
10.1186/s13073-015-0245-0
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Automated benchmarking of peptide-MHC class I binding predictions
- (2015) Thomas Trolle et al. BIOINFORMATICS
- EpiToolKit—a web-based workbench for vaccine design
- (2015) Benjamin Schubert et al. BIOINFORMATICS
- Computational and Bioinformatics Techniques for Immunology
- (2015) Francesco Pappalardo et al. Biomed Research International
- OptiType: precision HLA typing from next-generation sequencing data
- (2014) András Szolek et al. BIOINFORMATICS
- MHC2MIL: a novel multiple instance learning based method for MHC-II peptide binding prediction by considering peptide flanking region and residue positions
- (2014) Yichang Xu et al. BMC GENOMICS
- Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs
- (2014) Jorg J. A. Calis et al. IMMUNOGENETICS
- The immune epitope database (IEDB) 3.0
- (2014) Randi Vita et al. NUCLEIC ACIDS RESEARCH
- The IPD and IMGT/HLA database: allele variant databases
- (2014) James Robinson et al. NUCLEIC ACIDS RESEARCH
- NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ
- (2013) Edita Karosiene et al. IMMUNOGENETICS
- NetMHCstab- predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery
- (2013) Kasper W. Jørgensen et al. IMMUNOLOGY
- The regulatory landscape for actively personalized cancer immunotherapies
- (2013) Cedrik M Britten et al. NATURE BIOTECHNOLOGY
- ATHLATES: accurate typing of human leukocyte antigen through exome sequencing
- (2013) Chang Liu et al. NUCLEIC ACIDS RESEARCH
- Conformational B-Cell Epitope Prediction on Antigen Protein Structures: A Review of Current Algorithms and Comparison with Common Binding Site Prediction Methods
- (2013) Bo Yao et al. PLoS One
- Properties of MHC Class I Presented Peptides That Enhance Immunogenicity
- (2013) Jorg J. A. Calis et al. PLoS Computational Biology
- Peptide-MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity
- (2012) Mikkel Harndahl et al. EUROPEAN JOURNAL OF IMMUNOLOGY
- Structural analysis of B-cell epitopes in antibody:protein complexes
- (2012) Jens Vindahl Kringelum et al. MOLECULAR IMMUNOLOGY
- TEPITOPEpan: Extending TEPITOPE for Peptide Binding Prediction Covering over 700 HLA-DR Molecules
- (2012) Lianming Zhang et al. PLoS One
- HLA DNA typing: past, present, and future
- (2012) H. Erlich TISSUE ANTIGENS
- HLA typing from RNA-Seq sequence reads
- (2012) Sebastian Boegel et al. Genome Medicine
- Reliable B Cell Epitope Predictions: Impacts of Method Development and Improved Benchmarking
- (2012) Jens Vindahl Kringelum et al. PLoS Computational Biology
- POPISK: T-cell reactivity prediction using support vector machines and string kernels
- (2011) Chun-Wei Tung et al. BMC BIOINFORMATICS
- NetMHCcons: a consensus method for the major histocompatibility complex class I predictions
- (2011) Edita Karosiene et al. IMMUNOGENETICS
- Dana-Farber repository for machine learning in immunology
- (2011) Guang Lan Zhang et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Universal peptide vaccines – Optimal peptide vaccine design based on viral sequence conservation
- (2011) Nora C. Toussaint et al. VACCINE
- EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results
- (2010) Shide Liang et al. BMC BIOINFORMATICS
- NetCTLpan: pan-specific MHC class I pathway epitope predictions
- (2010) Thomas Stranzl et al. IMMUNOGENETICS
- Prediction of epitopes using neural network based methods
- (2010) Claus Lundegaard et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
- (2010) Jeremy Goecks et al. GENOME BIOLOGY
- FRED--a framework for T-cell epitope detection
- (2009) M. Feldhahn et al. BIOINFORMATICS
- The PickPocket method for predicting binding specificities for receptors based on receptor pocket similarities: application to MHC-peptide binding
- (2009) Hao Zhang et al. BIOINFORMATICS
- NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction
- (2009) Morten Nielsen et al. BMC BIOINFORMATICS
- Towardsin silicodesign of epitope-based vaccines
- (2009) Nora C Toussaint et al. Expert Opinion on Drug Discovery
- A Mathematical Framework for the Selection of an Optimal Set of Peptides for Epitope-Based Vaccines
- (2009) Nora C. Toussaint et al. PLoS Computational Biology
- Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods
- (2008) Hao Zhang et al. BIOINFORMATICS
- Evaluation of MHC class I peptide binding prediction servers: Applications for vaccine research
- (2008) Hong Lin et al. BMC IMMUNOLOGY
- NetMHC-3.0: accurate web accessible predictions of human, mouse and monkey MHC class I affinities for peptides of length 8–11
- (2008) Claus Lundegaard et al. NUCLEIC ACIDS RESEARCH
- IMGT(R), the international ImMunoGeneTics information system(R)
- (2008) M.-P. Lefranc et al. NUCLEIC ACIDS RESEARCH
- COBEpro: a novel system for predicting continuous B-cell epitopes
- (2008) Michael J. Sweredoski et al. PROTEIN ENGINEERING DESIGN & SELECTION
- A Systematic Assessment of MHC Class II Peptide Binding Predictions and Evaluation of a Consensus Approach
- (2008) Peng Wang et al. PLoS Computational Biology
- In SilicoTools for Predicting Peptides Binding to HLA-Class II Molecules: More Confusion than Conclusion
- (2007) Uthaman Gowthaman et al. JOURNAL OF PROTEOME RESEARCH
- Benchmarking B cell epitope prediction: Underperformance of existing methods
- (2004) Martin J. Blythe et al. PROTEIN SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now