Building plant microbiome vault: a future biotechnological resource

Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

(2018) Christopher S. Smillie et al.   Cell Host & Microbe

Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?

(2018) Haimin Chen et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Specialized core bacteria associate with plants adapted to adverse environment with high calcium contents

(2018) Fei Li et al.   PLoS One

Emergent simplicity in microbial community assembly

(2018) Joshua E. Goldford et al.   SCIENCE

Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota

(2018) Allen Van Deynze et al.   PLOS BIOLOGY

Build your own soil: exploring microfluidics to create microbial habitat structures

(2017) Kristin Aleklett et al.   ISME Journal

Effect of rhizobacterial consortia from undisturbed arid- and agro-ecosystems on wheat growth under different conditions

(2017) N.G. Inostroza et al.   LETTERS IN APPLIED MICROBIOLOGY

Human embryos: Collect reliable data on embryo selection

(2017) Charis Thompson   NATURE

Opinion: Why we need a National Living Soil Repository

(2017) Daniel K. Manter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simplified and representative bacterial community of maize roots

(2017) Ben Niu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Let the Core Microbiota Be Functional

(2017) Philippe Lemanceau et al.   TRENDS IN PLANT SCIENCE

Research priorities for harnessing plant microbiomes in sustainable agriculture

(2017) Posy E. Busby et al.   PLOS BIOLOGY

Mitigating climate change through managing constructed-microbial communities in agriculture

(2016) Cyd E. Hamilton et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management

(2016) R. Poudel et al.   PHYTOPATHOLOGY

Soil immune responses

(2016) J. M. Raaijmakers et al.   SCIENCE

Structural and functional differentiation of the root-associated bacterial microbiomes of perennial ryegrass

(2016) Lin Chen et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Soil-Borne Supremacy

(2016) Corné M.J. Pieterse et al.   TRENDS IN PLANT SCIENCE

Microbial Hub Taxa Link Host and Abiotic Factors to Plant Microbiome Variation

(2016) Matthew T. Agler et al.   PLOS BIOLOGY

Microbiome Selection Could Spur Next-Generation Plant Breeding Strategies

(2016) Murali Gopal et al.   Frontiers in Microbiology

Unlocking the bacterial and fungal communities assemblages of sugarcane microbiome

(2016) Rafael Soares Correa de Souza et al.   Scientific Reports

Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to Withstand Salinity

(2016) Zhilin Yuan et al.   Scientific Reports

Can functional hologenomics aid tackling current challenges in plant breeding?

(2015) Amaia Nogales et al.   Briefings in Functional Genomics

Microbiota and Host Nutrition across Plant and Animal Kingdoms

(2015) Stéphane Hacquard et al.   Cell Host & Microbe

The core root microbiome of sugarcanes cultivated under varying nitrogen fertilizer application

(2015) Yun Kit Yeoh et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of soil microbiota in nurse plant systems

(2015) Susana Rodríguez-Echeverría et al.   FUNCTIONAL ECOLOGY

Role of root microbiota in plant productivity

(2015) A. Tkacz et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Plant Microbiome at Work

(2015) Klaus Schlaeppi et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Functional overlap of the Arabidopsis leaf and root microbiota

(2015) Yang Bai et al.   NATURE

Disentangling the factors shaping microbiota composition across the plant holobiont

(2015) Stéphane Hacquard   NEW PHYTOLOGIST

The importance of the microbiome of the plant holobiont

(2015) Philippe Vandenkoornhuyse et al.   NEW PHYTOLOGIST

Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species

(2015) Devin Coleman-Derr et al.   NEW PHYTOLOGIST

Structure, variation, and assembly of the root-associated microbiomes of rice

(2015) Joseph Edwards et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Native root-associated bacteria rescue a plant from a sudden-wilt disease that emerged during continuous cropping

(2015) Rakesh Santhanam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metabolic dependencies drive species co-occurrence in diverse microbial communities

(2015) Aleksej Zelezniak et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa

(2015) S. L. Lebeis et al.   SCIENCE

PERN: an EU–Russia initiative for rhizosphere microbial resources

(2015) Stéphane Declerck et al.   TRENDS IN BIOTECHNOLOGY

Engineering Microbiomes to Improve Plant and Animal Health

(2015) U.G. Mueller et al.   TRENDS IN MICROBIOLOGY

Intact preservation of environmental samples by freezing under an alternating magnetic field

(2015) Yuki Morono et al.   Environmental Microbiology Reports

The Soil Microbiome Influences Grapevine-Associated Microbiota

(2015) Iratxe Zarraonaindia et al.   mBio

Manipulating the banana rhizosphere microbiome for biological control of Panama disease

(2015) Chao Xue et al.   Scientific Reports

Collaboration between grass seedlings and rhizobacteria to scavenge organic nitrogen in soils

(2015) James F. White et al.   AoB Plants

Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans

(2014) Lukas Hunziker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rhizosphere interactions: root exudates, microbes, and microbial communities

(2014) Xing-Feng Huang et al.   Botany

Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative

(2014) Maggie R. Wagner et al.   ECOLOGY LETTERS

Improved plant resistance to drought is promoted by the root-associated microbiome as a water stress-dependent trait

(2014) Eleonora Rolli et al.   ENVIRONMENTAL MICROBIOLOGY

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Plant-insect interactions under bacterial influence: ecological implications and underlying mechanisms

(2014) A. Sugio et al.   JOURNAL OF EXPERIMENTAL BOTANY

Structure and Functions of the Bacterial Microbiota of Plants

(2013) Davide Bulgarelli et al.   Annual Review of Plant Biology

Isolation of a Substantial Proportion of Forest Soil Bacterial Communities Detected via Pyrotag Sequencing

(2013) David VanInsberghe et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil microbiomes vary in their ability to confer drought tolerance to Arabidopsis

(2013) Gaston Zolla et al.   APPLIED SOIL ECOLOGY

The Impact of Beneficial Plant-Associated Microbes on Plant Phenotypic Plasticity

(2013) Chooi-Hua Goh et al.   JOURNAL OF CHEMICAL ECOLOGY

A role for below-ground biota in plant-plant facilitation

(2013) Susana Rodríguez-Echeverría et al.   JOURNAL OF ECOLOGY

Belowground biotic complexity drives aboveground dynamics: a test of the soil community feedback model

(2013) Thomas H. Pendergast et al.   NEW PHYTOLOGIST

Potential impact of soil microbiomes on the leaf metabolome and on herbivore feeding behavior

(2013) Dayakar V. Badri et al.   NEW PHYTOLOGIST

Bacterial Communities Associated with the Leaves and the Roots of Arabidopsis thaliana

(2013) Natacha Bodenhausen et al.   PLoS One

Quantitative divergence of the bacterial root microbiota in Arabidopsis thaliana relatives

(2013) K. Schlaeppi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bespoke microbiome therapy to manage plant diseases

(2013) Murali Gopal et al.   Frontiers in Microbiology

A Drought Resistance-Promoting Microbiome Is Selected by Root System under Desert Farming

(2012) Ramona Marasco et al.   PLoS One

Cultivation of unculturable soil bacteria

(2012) Van H.T. Pham et al.   TRENDS IN BIOTECHNOLOGY

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Directed Culturing of Microorganisms Using Metatranscriptomics

(2011) L. Bomar et al.   mBio

The Microbe-Free Plant: Fact or Artifact?

(2011) Laila P. Partida-Martínez et al.   Frontiers in Plant Science

Bacterial competition: surviving and thriving in the microbial jungle

(2009) Michael E. Hibbing et al.   NATURE REVIEWS MICROBIOLOGY

Regulation and function of root exudates

(2009) DAYAKAR V. BADRI et al.   PLANT CELL AND ENVIRONMENT

Survival of bacterial DNA and culturable bacteria in archived soils from the Rothamsted Broadbalk experiment

(2008) Ian M. Clark et al.   SOIL BIOLOGY & BIOCHEMISTRY