Genome-wide high-throughput SNP discovery and genotyping for understanding natural (functional) allelic diversity and domestication patterns in wild chickpea

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley

(2014) Hui Liu et al.   BMC GENOMICS

Efficient Imputation of Missing Markers in Low-Coverage Genotyping-by-Sequencing Data from Multiparental Crosses

(2014) B. Emma Huang et al.   GENETICS

An efficient and cost-effective approach for genic microsatellite marker-based large-scale trait association mapping: identification of candidate genes for seed weight in chickpea

(2014) Alice Kujur et al.   MOLECULAR BREEDING

A chromosomal genomics approach to assess and validate thedesiandkabulidraft chickpea genome assemblies

(2014) Pradeep Ruperao et al.   PLANT BIOTECHNOLOGY JOURNAL

Genetic Dissection of Drought and Heat Tolerance in Chickpea through Genome-Wide and Candidate Gene-Based Association Mapping Approaches

(2014) Mahendar Thudi et al.   PLoS One

Natural Allelic Diversity, Genetic Structure and Linkage Disequilibrium Pattern in Wild Chickpea

(2014) Maneesha S. Saxena et al.   PLoS One

Rapid Identification of Alleles at the Soybean Maturity Gene E3 using genotyping by Sequencing and a Haplotype-Based Approach

(2014) Aurélie Tardivel et al.   Plant Genome

Genome Wide Association Mapping of Resistance in Soybean with a Genotyping-by-Sequencing Approach

(2014) Maxime Bastien et al.   Plant Genome

The Acid Phosphatase-Encoding Gene GmACP1 Contributes to Soybean Tolerance to Low-Phosphorus Stress

(2014) Dan Zhang et al.   PLoS Genetics

Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers

(2014) Manish Roorkiwal et al.   Frontiers in Plant Science

Characterization and Evaluation of Wild Annual Species for Agro-morphological Traits and Major Biotic Stresses under Northwestern Indian Conditions

(2013) Mohar Singh et al.   CROP SCIENCE

Functionally Relevant Microsatellite Markers From Chickpea Transcription Factor Genes for Efficient Genotyping Applications and Trait Association Mapping

(2013) A. Kujur et al.   DNA RESEARCH

Molecular mapping of QTLs for resistance to Fusarium wilt (race 1) and Ascochyta blight in chickpea (Cicer arietinum L.)

(2013) Murali Mohan Sabbavarapu et al.   EUPHYTICA

Genetic marker discovery, intraspecific linkage map construction and quantitative trait locus analysis of ascochyta blight resistance in chickpea (Cicer arietinum L.)

(2013) Amber Stephens et al.   MOLECULAR BREEDING

Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement

(2013) Rajeev K Varshney et al.   NATURE BIOTECHNOLOGY

Barley whole exome capture: a tool for genomic research in the genusHordeumand beyond

(2013) Martin Mascher et al.   PLANT JOURNAL

A draft genome sequence of the pulse crop chickpea (Cicer arietinum L.)

(2013) Mukesh Jain et al.   PLANT JOURNAL

Genome Wide Allele Frequency Fingerprints (GWAFFs) of Populations via Genotyping by Sequencing

(2013) Stephen Byrne et al.   PLoS One

An Improved Genotyping by Sequencing (GBS) Approach Offering Increased Versatility and Efficiency of SNP Discovery and Genotyping

(2013) Humira Sonah et al.   PLoS One

A Next-Generation Sequencing Method for Genotyping-by-Sequencing of Highly Heterozygous Autotetraploid Potato

(2013) Jan G. A. M. L. Uitdewilligen et al.   PLoS One

Mapping and identification of a Cicer arietinum NSP2 gene involved in nodulation pathway

(2013) L. Ali et al.   THEORETICAL AND APPLIED GENETICS

Bridging the genotyping gap: using genotyping by sequencing (GBS) to add high-density SNP markers and new value to traditional bi-parental mapping and breeding populations

(2013) Jennifer Spindel et al.   THEORETICAL AND APPLIED GENETICS

Genetic dissection of drought tolerance in chickpea (Cicer arietinum L.)

(2013) Rajeev K. Varshney et al.   THEORETICAL AND APPLIED GENETICS

Genomic Prediction in Maize Breeding Populations with Genotyping-by-Sequencing

(2013) José Crossa et al.   G3-Genes Genomes Genetics

Single Nucleotide Polymorphism Genotyping for Breeding and Genetics Applications in Chickpea and Pigeonpea using the BeadXpress Platform

(2013) Manish Roorkiwal et al.   Plant Genome

Genetic diversity assessment of sesame core collection in China by phenotype and molecular markers and extraction of a mini-core collection

(2012) Yanxin Zhang et al.   BMC GENETICS

High-Throughput SNP Discovery and Genotyping for Constructing a Saturated Linkage Map of Chickpea (Cicer arietinum L.)

(2012) R. Gaur et al.   DNA RESEARCH

Genetic structure and diversity analysis of the primary gene pool of chickpea using SSR markers

(2012) P. Choudhary et al.   GENETICS AND MOLECULAR RESEARCH

Transcriptome sequencing of wild chickpea as a rich resource for marker development

(2012) Shalu Jhanwar et al.   PLANT BIOTECHNOLOGY JOURNAL

Large-scale development of cost-effective SNP marker assays for diversity assessment and genetic mapping in chickpea and comparative mapping in legumes

(2012) Pavana J. Hiremath et al.   PLANT BIOTECHNOLOGY JOURNAL

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

(2012) Jesse A. Poland et al.   PLoS One

Comparative Analysis of Kabuli Chickpea Transcriptome with Desi and Wild Chickpea Provides a Rich Resource for Development of Functional Markers

(2012) Gaurav Agarwal et al.   PLoS One

Genome-wide association mapping of leaf metabolic profiles for dissecting complex traits in maize

(2012) C. Riedelsheimer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

(2012) G. P. Morris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genetic structure and linkage disequilibrium pattern of a rapeseed (Brassica napus L.) association mapping panel revealed by microsatellites

(2012) Yingjie Xiao et al.   THEORETICAL AND APPLIED GENETICS

Patterns of linkage disequilibrium and association mapping in diploid alfalfa (M. sativa L.)

(2012) Muhammet Sakiroglu et al.   THEORETICAL AND APPLIED GENETICS

Chickpea Improvement: Role of Wild Species and Genetic Markers

(2011) Rakesh Singh et al.   Biotechnology & Genetic Engineering Reviews

Genome wide association analyses for drought tolerance related traits in barley (Hordeum vulgare L.)

(2011) R.K. Varshney et al.   FIELD CROPS RESEARCH

Assessment of ICCV 2 × JG 62 chickpea progenies shows sensitivity of reproduction to salt stress and reveals QTL for seed yield and yield components

(2011) Vincent Vadez et al.   MOLECULAR BREEDING

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Genomic tools and germplasm diversity for chickpea improvement

(2011) Hari D. Upadhyaya et al.   Plant Genetic Resources-Characterization and Utilization

Genetic Diversity of Iranian Accessions, Improved Lines of Chickpea (Cicer arietinum L.) and Their Wild Relatives by Using Simple Sequence Repeats

(2011) Ali Saeed et al.   PLANT MOLECULAR BIOLOGY REPORTER

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Novel SSR Markers from BAC-End Sequences, DArT Arrays and a Comprehensive Genetic Map with 1,291 Marker Loci for Chickpea (Cicer arietinum L.)

(2011) Mahendar Thudi et al.   PLoS One

Whole-genome nucleotide diversity, recombination, and linkage disequilibrium in the model legume Medicago truncatula

(2011) A. Branca et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Development and use of genic molecular markers (GMMs) for construction of a transcript map of chickpea (Cicer arietinum L.)

(2011) Neha Gujaria et al.   THEORETICAL AND APPLIED GENETICS

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

DNA polymorphisms and haplotype patterns of transcription factors involved in barley endosperm development are associated with key agronomic traits

(2010) Grit Haseneyer et al.   BMC PLANT BIOLOGY

Mapping of QTLs governing agronomic and yield traits in chickpea

(2010) S. J. M. Gowda et al.   JOURNAL OF APPLIED GENETICS

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Resequencing of 31 wild and cultivated soybean genomes identifies patterns of genetic diversity and selection

(2010) Hon-Ming Lam et al.   NATURE GENETICS

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

(2010) H. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Integration of novel SSR and gene-based SNP marker loci in the chickpea genetic map and establishment of new anchor points with Medicago truncatula genome

(2010) Spurthi N. Nayak et al.   THEORETICAL AND APPLIED GENETICS

Genetic analysis of agronomic traits in a wide cross of chickpea

(2009) M.J. Cobos et al.   FIELD CROPS RESEARCH

A First-Generation Haplotype Map of Maize

(2009) M. A. Gore et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Genetic structure, diversity, and allelic richness in composite collection and reference set in chickpea (Cicer arietinum L.)

(2008) Hari D Upadhyaya et al.   BMC PLANT BIOLOGY

A note on the evolution of kabuli chickpeas as shown by induced mutations in Cicer reticulatum Ladizinsky

(2008) Cengiz Toker   GENETIC RESOURCES AND CROP EVOLUTION

Development of chickpea EST-SSR markers and analysis of allelic variation across related species

(2008) Shalu Choudhary et al.   THEORETICAL AND APPLIED GENETICS