Integration of Protein Abundance and Structure Data Reveals Competition in the ErbB Signaling Network

Low RIN1 Expression in HCC Is Associated With Tumor Invasion and Unfavorable Prognosis

(2013) Hui He et al.   AMERICAN JOURNAL OF CLINICAL PATHOLOGY

A computational framework for boosting confidence in high-throughput protein-protein interaction datasets

(2013) Raghavendra Hosur et al.   GENOME BIOLOGY

Competing G protein-coupled receptor kinases balance G protein and β-arrestin signaling

(2012) Domitille Heitzler et al.   Molecular Systems Biology

Combinatorial Complexity and Compositional Drift in Protein Interaction Networks

(2012) Eric J. Deeds et al.   PLoS One

Intrinsic Noise Analyzer: A Software Package for the Exploration of Stochastic Biochemical Kinetics Using the System Size Expansion

(2012) Philipp Thomas et al.   PLoS One

c-Myc Regulates RNA Splicing of the A-Raf Kinase and Its Activation of the ERK Pathway

(2011) J. Rauch et al.   CANCER RESEARCH

Tunable Signal Processing in Synthetic MAP Kinase Cascades

(2011) Ellen C. O'Shaughnessy et al.   CELL

Three-dimensional modeling of protein interactions and complexes is going ‘omics

(2011) Amelie Stein et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Tissue-Specific Proteins and Functional Implications

(2011) Dorothea Emig et al.   JOURNAL OF PROTEOME RESEARCH

Structural and functional protein network analyses predict novel signaling functions for rhodopsin

(2011) C. Kiel et al.   Molecular Systems Biology

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

The quantitative proteome of a human cell line

(2011) M. Beck et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Molecular mechanism and physiological functions of clathrin-mediated endocytosis

(2011) Harvey T. McMahon et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Feedback regulation of EGFR signalling: decision making by early and delayed loops

(2011) Roi Avraham et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Structural principles within the human-virus protein-protein interaction network

(2011) E. A. Franzosa et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaffold Proteins: Hubs for Controlling the Flow of Cellular Information

(2011) M. C. Good et al.   SCIENCE

A Directed Protein Interaction Network for Investigating Intracellular Signal Transduction

(2011) A. Vinayagam et al.   Science Signaling

PI3K/Akt-sensitive MEK-independent compensatory circuit of ERK activation in ER-positive PI3K-mutant T47D breast cancer cells

(2010) Edita Aksamitiene et al.   CELLULAR SIGNALLING

Cell Death or Survival Promoted by Alternative Isoforms of ErbB4

(2010) Maria Sundvall et al.   MOLECULAR BIOLOGY OF THE CELL

Signalling ballet in space and time

(2010) Boris N. Kholodenko et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Reactome: a database of reactions, pathways and biological processes

(2010) D. Croft et al.   NUCLEIC ACIDS RESEARCH

NetPath: a public resource of curated signal transduction pathways

(2010) Kumaran Kandasamy et al.   GENOME BIOLOGY

Nanoscale Imaging of Epidermal Growth Factor Receptor Clustering

(2009) Abedelnasser Abulrob et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Non-genetic origins of cell-to-cell variability in TRAIL-induced apoptosis

(2009) Sabrina L. Spencer et al.   NATURE

Enzymatic assembly of DNA molecules up to several hundred kilobases

(2009) Daniel G Gibson et al.   NATURE METHODS

Cell Type-Specific Importance of Ras-c-Raf Complex Association Rate Constants for MAPK Signaling

(2009) C. Kiel et al.   Science Signaling

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

(2009) Chunlei Wu et al.   GENOME BIOLOGY

Periodic Activation of Wnt/β-Catenin Signaling Enhances Somatic Cell Reprogramming Mediated by Cell Fusion

(2008) Frederic Lluis et al.   Cell Stem Cell

Membrane-dependent signal integration by the Ras activator Son of sevenless

(2008) Jodi Gureasko et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

Quantitative proteomics and phosphoproteomics reveal novel insights into complexity and dynamics of the EGFR signaling network

(2008) Sandra Morandell et al.   PROTEOMICS