Intrinsic Noise Analyzer: A Software Package for the Exploration of Stochastic Biochemical Kinetics Using the System Size Expansion
Published 2012 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Intrinsic Noise Analyzer: A Software Package for the Exploration of Stochastic Biochemical Kinetics Using the System Size Expansion
Authors
Keywords
-
Journal
PLoS One
Volume 7, Issue 6, Pages e38518
Publisher
Public Library of Science (PLoS)
Online
2012-06-13
DOI
10.1371/journal.pone.0038518
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Discreteness-induced concentration inversion in mesoscopic chemical systems
- (2012) Rajesh Ramaswamy et al. Nature Communications
- The Moderately Efficient Enzyme: Evolutionary and Physicochemical Trends Shaping Enzyme Parameters
- (2011) Arren Bar-Even et al. BIOCHEMISTRY
- StochKit2: software for discrete stochastic simulation of biochemical systems with events
- (2011) K. R. Sanft et al. BIOINFORMATICS
- How accurate are the nonlinear chemical Fokker-Planck and chemical Langevin equations?
- (2011) Ramon Grima et al. JOURNAL OF CHEMICAL PHYSICS
- Intrinsic noise alters the frequency spectrum of mesoscopic oscillatory chemical reaction systems
- (2011) Rajesh Ramaswamy et al. Scientific Reports
- Elucidating Cytochrome c Release from Mitochondria: Insights from an In Silico Three-Dimensional Model
- (2010) Zhi Yang Tam et al. BIOPHYSICAL JOURNAL
- BioModels Database: An enhanced, curated and annotated resource for published quantitative kinetic models
- (2010) Chen Li et al. BMC Systems Biology
- Stochastic theory of large-scale enzyme-reaction networks: Finite copy number corrections to rate equation models
- (2010) Philipp Thomas et al. JOURNAL OF CHEMICAL PHYSICS
- An effective rate equation approach to reaction kinetics in small volumes: Theory and application to biochemical reactions in nonequilibrium steady-state conditions
- (2010) R. Grima JOURNAL OF CHEMICAL PHYSICS
- Functional roles for noise in genetic circuits
- (2010) Avigdor Eldar et al. NATURE
- Detailed Simulations of Cell Biology with Smoldyn 2.1
- (2010) Steven S. Andrews et al. PLoS Computational Biology
- CellMC—a multiplatform model compiler for the Cell Broadband Engine and ×86
- (2009) Emmet Caulfield et al. BIOINFORMATICS
- Investigating the robustness of the classical enzyme kinetic equations in small intracellular compartments
- (2009) Ramon Grima BMC Systems Biology
- Efficient Formulations for Exact Stochastic Simulation of Chemical Systems
- (2009) Sean Mauch et al. IEEE-ACM Transactions on Computational Biology and Bioinformatics
- Mesoscopic statistical properties of multistep enzyme-mediated reactions
- (2009) W.H. de Ronde et al. IET Systems Biology
- Moment-closure approximations for mass-action models
- (2009) C.S. Gillespie IET Systems Biology
- A diffusional bimolecular propensity function
- (2009) Daniel T. Gillespie JOURNAL OF CHEMICAL PHYSICS
- Noise-Induced Breakdown of the Michaelis-Menten Equation in Steady-State Conditions
- (2009) R. Grima PHYSICAL REVIEW LETTERS
- Quantification of Circadian Rhythms in Single Cells
- (2009) Pål O. Westermark et al. PLoS Computational Biology
- LibSBML: an API Library for SBML
- (2008) B. J. Bornstein et al. BIOINFORMATICS
- The stochastic nature of biochemical networks
- (2008) Vahid Shahrezaei et al. CURRENT OPINION IN BIOTECHNOLOGY
- Modelling reaction kinetics inside cells
- (2008) Ramon Grima et al. Essays in Biochemistry
- The challenge of lipid rafts
- (2008) Linda J. Pike JOURNAL OF LIPID RESEARCH
- CellDesigner 3.5: A Versatile Modeling Tool for Biochemical Networks
- (2008) A. Funahashi et al. PROCEEDINGS OF THE IEEE
- Fast Monte Carlo Simulation Methods for Biological Reaction-Diffusion Systems in Solution and on Surfaces
- (2008) Rex A. Kerr et al. SIAM JOURNAL ON SCIENTIFIC COMPUTING
- Modeling and Simulating Chemical Reactions
- (2008) Desmond J. Higham SIAM REVIEW
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now