Molecular epidemiology and phylogenetics of human enteroviruses: Is there a forest behind the trees?

Co-circulation of multiple subtypes of enterovirus A71 (EV- A71) genotype C, including novel recombinants characterised by use of whole genome sequencing (WGS), Denmark 2016

(2017) Sofie E Midgley et al.   Eurosurveillance

ICTV Virus Taxonomy Profile: Picornaviridae

(2017) R. Zell et al.   JOURNAL OF GENERAL VIROLOGY

Molecular evolution of types in non-polio enteroviruses

(2017) Alexander N. Lukashev et al.   JOURNAL OF GENERAL VIROLOGY

A Selective Bottleneck Shapes the Evolutionary Mutant Spectra of Enterovirus A71 during Viral Dissemination in Humans

(2017) Sheng-Wen Huang et al.   JOURNAL OF VIROLOGY

Prevalence of enteroviruses in healthy populations and excretion of pathogens in patients with hand, foot, and mouth disease in a highly endemic area of southwest China

(2017) Qiang Wu et al.   PLoS One

African Non-Human Primates Host Diverse Enteroviruses

(2017) Illich Manfred Mombo et al.   PLoS One

Design of a Genetically Stable High Fidelity Coxsackievirus B3 Polymerase That Attenuates Virus Growthin Vivo

(2016) Seth McDonald et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Molecular epidemiology and the evolution of human coxsackievirus A6

(2016) Jiratchaya Puenpa et al.   JOURNAL OF GENERAL VIROLOGY

Characterization of VP1 sequence of Coxsackievirus A16 isolates by Bayesian evolutionary method

(2016) Guolian Zhao et al.   Virology Journal

Circulation of multiple serotypes of highly divergent enterovirus C in the Xinjiang Uighur Autonomous Region of China

(2016) Yong Zhang et al.   Scientific Reports

Phylodynamic reconstruction of the spatiotemporal transmission and demographic history of coxsackievirus B2

(2015) Hui-Wen Huang et al.   BMC BIOINFORMATICS

Transmission patterns of human enterovirus 71 to, from and among European countries, 2003 to 2013

(2015) Chervin Hassel et al.   Eurosurveillance

Molecular epidemiology of echoviruses 11 and 30 in Russia: Different properties of genotypes within an enterovirus serotype

(2015) Maria S. Yarmolskaya et al.   INFECTION GENETICS AND EVOLUTION

First Detection of an Enterovirus C99 in a Captive Chimpanzee with Acute Flaccid Paralysis, from the Tchimpounga Chimpanzee Rehabilitation Center, Republic of Congo

(2015) Illich Manfred Mombo et al.   PLoS One

Transmission and Demographic Dynamics of Coxsackievirus B1

(2015) Pei-Yu Chu et al.   PLoS One

Viral quasispecies

(2015) Raul Andino et al.   VIROLOGY

Twenty-Eight Years of Poliovirus Replication in an Immunodeficient Individual: Impact on the Global Polio Eradication Initiative

(2015) Glynis Dunn et al.   PLoS Pathogens

Recombination strategies and evolutionary dynamics of the Human enterovirus A global gene pool

(2014) A. N. Lukashev et al.   JOURNAL OF GENERAL VIROLOGY

Attenuation of Human Enterovirus 71 High-Replication-Fidelity Variants in AG129 Mice

(2014) T. Meng et al.   JOURNAL OF VIROLOGY

High Rates of Infection with Novel Enterovirus Variants in Wild Populations of Mandrills and Other Old World Monkey Species

(2014) D. V. Nguyen et al.   JOURNAL OF VIROLOGY

Molecular Comparison and Evolutionary Analyses of VP1 Nucleotide Sequences of New African Human Enterovirus 71 Isolates Reveal a Wide Genetic Diversity

(2014) Maël Bessaud et al.   PLoS One

Time Series Analysis of Hand-Foot-Mouth Disease Hospitalization in Zhengzhou: Establishment of Forecasting Models Using Climate Variables as Predictors

(2014) Huifen Feng et al.   PLoS One

Co-Circulation and Genomic Recombination of Coxsackievirus A16 and Enterovirus 71 during a Large Outbreak of Hand, Foot, and Mouth Disease in Central China

(2014) Weiyong Liu et al.   PLoS One

Seroepidemiology and Molecular Epidemiology of Enterovirus 71 in Russia

(2014) Ludmila V. Akhmadishina et al.   PLoS One

Robustness against serum neutralization of a poliovirus type 1 from a lethal epidemic of poliomyelitis in the Republic of Congo in 2010

(2014) J. F. Drexler et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detection of human enteroviruses and parechoviruses as part of the national enterovirus surveillance in the Netherlands, 1996–2011

(2013) S. M. G. Sanden et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Recombination and evolutionary dynamics of human echovirus 6

(2013) María Cabrerizo et al.   JOURNAL OF MEDICAL VIROLOGY

The role of mutational robustness in RNA virus evolution

(2013) Adam S. Lauring et al.   NATURE REVIEWS MICROBIOLOGY

Picornavirus and enterovirus diversity with associated human diseases

(2012) Caroline Tapparel et al.   INFECTION GENETICS AND EVOLUTION

Molecular Characterization of Human Enteroviruses in the Central African Republic: Uncovering Wide Diversity and Identification of a New Human Enterovirus A71 Genogroup

(2012) M. Bessaud et al.   JOURNAL OF CLINICAL MICROBIOLOGY

A single mutation in capsid protein VP1 (Q145E) of a genogroup C4 strain of human enterovirus 71 generates a mouse-virulent phenotype

(2012) Z. Zaini et al.   JOURNAL OF GENERAL VIROLOGY

Novel serotypes 105 and 116 are members of distinct subgroups of Human enterovirus C

(2012) A. N. Lukashev et al.   JOURNAL OF GENERAL VIROLOGY

Early human enterovirus infections in healthy Swedish children participating in the PRODIA pilot study

(2012) Marja-Leena Simonen-Tikka et al.   JOURNAL OF MEDICAL VIROLOGY

Characterizing the Picornavirus Landscape among Synanthropic Nonhuman Primates in Bangladesh, 2007 to 2008

(2012) M. S. Oberste et al.   JOURNAL OF VIROLOGY

Molecular Epidemiology and Evolution of Human Enterovirus Serotype 68 in Thailand, 2006–2011

(2012) Piyada Linsuwanon et al.   PLoS One

Recent advances in the molecular epidemiology and control of human enterovirus 71 infection

(2012) Peter C McMinn   Current Opinion in Virology

Production of EV71 vaccine candidates

(2012) Pele Chong et al.   Human Vaccines & Immunotherapeutics

From Molecular Genetics to Phylodynamics: Evolutionary Relevance of Mutation Rates Across Viruses

(2012) Rafael Sanjuán   PLoS Pathogens

Cocirculation of Two Transmission Lineages of Echovirus 6 in Jinan, China, as Revealed by Environmental Surveillance and Sequence Analysis

(2011) Zexin Tao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mechanisms Controlling Virulence Thresholds of Mixed Viral Populations

(2011) K. Z. Lancaster et al.   JOURNAL OF VIROLOGY

The Association of Recombination Events in the Founding and Emergence of Subgenogroup Evolutionary Lineages of Human Enterovirus 71

(2011) E. C. McWilliam Leitch et al.   JOURNAL OF VIROLOGY

Detection and Genetic Characterization of Enteroviruses Circulating among Wild Populations of Chimpanzees in Cameroon: Relationship with Human and Simian Enteroviruses

(2011) H. Harvala et al.   JOURNAL OF VIROLOGY

Emergence and Transmission Pathways of Rapidly Evolving Evolutionary Branch C4a Strains of Human Enterovirus 71 in the Central Plain of China

(2011) Yong Zhang et al.   PLoS One

Survey of enterovirus infections from hand, foot and mouth disease outbreak in china, 2009

(2011) Fan Yang et al.   Virology Journal

From Emergence to Eradication: The Epidemiology of Poliomyelitis Deconstructed

(2010) N. Nathanson et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

The largest outbreak of hand; foot and mouth disease in Singapore in 2008: The role of enterovirus 71 and coxsackievirus A strains

(2010) Yan Wu et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Evolutionary Dynamics and Temporal/Geographical Correlates of Recombination in the Human Enterovirus Echovirus Types 9, 11, and 30

(2010) E. C. McWilliam Leitch et al.   JOURNAL OF VIROLOGY

Evolutionary Genetics of Human Enterovirus 71: Origin, Population Dynamics, Natural Selection, and Seasonal Periodicity of the VP1 Gene

(2010) K. K. Tee et al.   JOURNAL OF VIROLOGY

Viral security proteins: counteracting host defences

(2010) Vadim I. Agol et al.   NATURE REVIEWS MICROBIOLOGY

Retrospective seroepidemiology indicated that human enterovirus 71 and coxsackievirus A16 circulated wildly in central and southern China before large-scale outbreaks from 2008

(2010) Zhen Zhu et al.   Virology Journal

A large Finnish echovirus 30 outbreak was preceded by silent circulation of the same genotype

(2010) Carita Savolainen-Kopra et al.   VIRUS GENES

Resolving ambiguities in genetic typing of human enterovirus species C clinical isolates and identification of enterovirus 96, 99 and 102

(2009) B. A. Brown et al.   JOURNAL OF GENERAL VIROLOGY

Phylogeography of circulating populations of human echovirus 30 over 50 years: Nucleotide polymorphism and signature of purifying selection in the VP1 capsid protein gene

(2008) J.-L. Bailly et al.   INFECTION GENETICS AND EVOLUTION

Identification of Enteroviruses in Naturally Infected Captive Primates

(2008) W. A. Nix et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Transmission Networks and Population Turnover of Echovirus 30

(2008) E. C. M. Leitch et al.   JOURNAL OF VIROLOGY

Calibration of Multiple Poliovirus Molecular Clocks Covering an Extended Evolutionary Range

(2008) J. Jorba et al.   JOURNAL OF VIROLOGY

Use of Massively Parallel Ultradeep Pyrosequencing To Characterize the Genetic Diversity of Hepatitis B Virus in Drug-Resistant and Drug-Naive Patients and To Detect Minor Variants in Reverse Transcriptase and Hepatitis B S Antigen

(2008) M. Solmone et al.   JOURNAL OF VIROLOGY

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

(2008) Eugene V. Koonin et al.   NATURE REVIEWS MICROBIOLOGY