DNA metabarcoding-a new approach to fauna monitoring in mine site restoration

High-throughput eDNA monitoring of fungi to track functional recovery in ecological restoration

(2018) DongFeng Yan et al.   BIOLOGICAL CONSERVATION

Appropriate aspirations for effective post-mining restoration and rehabilitation: a response to Kaźmierczak et al.

(2018) Adam T. Cross et al.   Environmental Earth Sciences

Towards robust and repeatable sampling methods in eDNA-based studies

(2018) Ian A. Dickie et al.   Molecular Ecology Resources

Is a science-policy nexus void leading to restoration failure in global mining?

(2017) Jason Stevens et al.   ENVIRONMENTAL SCIENCE & POLICY

The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA

(2017) Joanna R. Freeland   GENOME

Revegetation rewilds the soil bacterial microbiome of an old field

(2017) Nicholas J. C. Gellie et al.   MOLECULAR ECOLOGY

Environmental DNA enables detection of terrestrial mammals from forest pond water

(2017) Masayuki Ushio et al.   Molecular Ecology Resources

Ecosystem biomonitoring with eDNA: metabarcoding across the tree of life in a tropical marine environment

(2017) Michael Stat et al.   Scientific Reports

Pellets of proof: First glimpse of the dietary composition of adult odonates as revealed by metabarcoding of feces

(2017) Kari M. Kaunisto et al.   Ecology and Evolution

Metabarcoding monitoring analysis: the pros and cons of using co-extracted environmental DNA and RNA data to assess offshore oil production impacts on benthic communities

(2017) Olivier Laroche et al.   PeerJ

Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications

(2017) Xavier Pochon et al.   PLoS One

Is qualitative and quantitative metabarcoding of dung fauna biodiversity feasible?

(2016) Wolf U. Blanckenhorn et al.   ENVIRONMENTAL TOXICOLOGY AND CHEMISTRY

The use of DNA barcodes in food web construction—terrestrial and aquatic ecologists unite!

(2016) Tomas Roslin et al.   GENOME

Large-Scale Monitoring of Plants through Environmental DNA Metabarcoding of Soil: Recovery, Resolution, and Annotation of Four DNA Markers

(2016) Nicole A. Fahner et al.   PLoS One

Application of a Gondwanan perspective to restore ecological integrity in the south-western Australian global biodiversity hotspot

(2016) Grant Wardell-Johnson et al.   RESTORATION ECOLOGY

A framework for the practical science necessary to restore sustainable, resilient, and biodiverse ecosystems

(2016) Ben P. Miller et al.   RESTORATION ECOLOGY

DNA Metabarcoding Reveals Diet Overlap between the Endangered Walia Ibex and Domestic Goats - Implications for Conservation

(2016) Berihun Gebremedhin et al.   PLoS One

Environmental DNA (eDNA) Detection Probability Is Influenced by Seasonal Activity of Organisms

(2016) Lesley S. de Souza et al.   PLoS One

The utility of DNA metabarcoding for studying the response of arthropod diversity and composition to land-use change in the tropics

(2016) Kingsly Chuo Beng et al.   Scientific Reports

Choice of capture and extraction methods affect detection of freshwater biodiversity from environmental DNA

(2015) Kristy Deiner et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Using eDNA to develop a national citizen science-based monitoring programme for the great crested newt (Triturus cristatus)

(2015) Jeremy Biggs et al.   BIOLOGICAL CONSERVATION

Fishing in the Water: Effect of Sampled Water Volume on Environmental DNA-Based Detection of Macroinvertebrates

(2015) Elvira Mächler et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction

(2015) Toshifumi Minamoto et al.   LIMNOLOGY

Phylogenetic community ecology of soil biodiversity using mitochondrial metagenomics

(2015) Carmelo Andújar et al.   MOLECULAR ECOLOGY

Statistical approaches to account for false-positive errors in environmental DNA samples

(2015) José J. Lahoz-Monfort et al.   Molecular Ecology Resources

Optimizing techniques to capture and extract environmental DNA for detection and quantification of fish

(2015) Jessica J. Eichmiller et al.   Molecular Ecology Resources

Drinking water as a source of environmental DNA for the detection of terrestrial wildlife species

(2015) Torrey W. Rodgers et al.   Conservation Genetics Resources

Evaluating a multigene environmental DNA approach for biodiversity assessment

(2015) Alexei J. Drummond et al.   GigaScience

Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass—Sequence Relationships with an Innovative Metabarcoding Protocol

(2015) Vasco Elbrecht et al.   PLoS One

History, applications, methodological issues and perspectives for the use environmental DNA (eDNA) in marine and freshwater environments

(2015) Edgardo E. Díaz-Ferguson et al.   REVISTA DE BIOLOGIA TROPICAL

Biogeography and speciation of terrestrial fauna in the south-western Australian biodiversity hotspot

(2014) Michael G. Rix et al.   BIOLOGICAL REVIEWS

DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match

(2014) B. E. Deagle et al.   Biology Letters

Selective-logging and oil palm: multitaxon impacts, biodiversity indicators, and trade-offs for conservation planning

(2014) David P. Edwards et al.   ECOLOGICAL APPLICATIONS

Using metabarcoding to ask if easily collected soil and leaf-litter samples can be used as a general biodiversity indicator

(2014) Chenxue Yang et al.   ECOLOGICAL INDICATORS

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Changes in the global value of ecosystem services

(2014) Robert Costanza et al.   GLOBAL ENVIRONMENTAL CHANGE-HUMAN AND POLICY DIMENSIONS

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

(2014) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

Environmental metabarcodes for insects:in silicoPCR reveals potential for taxonomic bias

(2014) Laurence J. Clarke et al.   Molecular Ecology Resources

Pyrosequencing of prey DNA in faeces of carnivorous land snails to facilitate ecological restoration and relocation programmes

(2014) Benjamin R. Waterhouse et al.   OECOLOGIA

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

(2014) J. Gibson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Next generation restoration genetics: applications and opportunities

(2014) Anna V. Williams et al.   TRENDS IN PLANT SCIENCE

How long is enough to detect terrestrial animals? Estimating the minimum trapping effort on camera traps

(2014) Xingfeng Si et al.   PeerJ

Reliable, verifiable and efficient monitoring of biodiversity via metabarcoding

(2013) Yinqiu Ji et al.   ECOLOGY LETTERS

Molecular field analysis of trophic relationships in soil-dwelling invertebrates to identify mercury, lead and cadmium transmission through forest ecosystems

(2013) Lucija Šerić Jelaska et al.   MOLECULAR ECOLOGY

Molecular analysis of the diets of snakes: changes in prey exploitation during development of the rare smooth snakeCoronella austriaca

(2013) David S. Brown et al.   MOLECULAR ECOLOGY

Dietary competition between the alien Asian Musk Shrew (Suncus murinus) and a re-introduced population of Telfair's Skink (Leiolopisma telfairii)

(2013) D. S. Brown et al.   MOLECULAR ECOLOGY

Carrion fly-derived DNA as a tool for comprehensive and cost-effective assessment of mammalian biodiversity

(2013) Sébastien Calvignac-Spencer et al.   MOLECULAR ECOLOGY

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

Using Next-Generation Sequencing to Analyse the Diet of a Highly Endangered Land Snail (Powelliphanta augusta) Feeding on Endemic Earthworms

(2013) Stéphane Boyer et al.   PLoS One

A review of fauna in mine rehabilitation in Australia: Current state and future directions

(2012) Romane H. Cristescu et al.   BIOLOGICAL CONSERVATION

Screening mammal biodiversity using DNA from leeches

(2012) Ida Bærholm Schnell et al.   CURRENT BIOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

New environmental metabarcodes for analysing soil DNA: potential for studying past and present ecosystems

(2012) LAURA S. EPP et al.   MOLECULAR ECOLOGY

Carnivore diet analysis based on next-generation sequencing: application to the leopard cat (Prionailurus bengalensis) in Pakistan

(2012) WASIM SHEHZAD et al.   MOLECULAR ECOLOGY

Towards next-generation biodiversity assessment using DNA metabarcoding

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Biodiversity soup: metabarcoding of arthropods for rapid biodiversity assessment and biomonitoring

(2012) Douglas W. Yu et al.   Methods in Ecology and Evolution

Clustering 16S rRNA for OTU prediction: a method of unsupervised Bayesian clustering

(2011) Xiaolin Hao et al.   BIOINFORMATICS

Moorea BIOCODE barcode library as a tool for understanding predator–prey interactions: insights into the diet of common predatory coral reef fishes

(2011) M. Leray et al.   CORAL REEFS

Meta-barcoding of ‘dirt’ DNA from soil reflects vertebrate biodiversity

(2011) KENNETH ANDERSEN et al.   MOLECULAR ECOLOGY

Landscape age and soil fertility, climatic stability, and fire regime predictability: beyond the OCBIL framework

(2011) Ladislav Mucina et al.   PLANT AND SOIL

DNA-Based Faecal Dietary Analysis: A Comparison of qPCR and High Throughput Sequencing Approaches

(2011) Dáithí C. Murray et al.   PLoS One

Ultrasequencing of the meiofaunal biosphere: practice, pitfalls and promises

(2010) S. CREER et al.   MOLECULAR ECOLOGY

Ecometagenetics confirm high tropical rainforest nematode diversity

(2010) DOROTA L. PORAZINSKA et al.   MOLECULAR ECOLOGY

Molecular analysis of parasitoid linkages (MAPL): gut contents of adult parasitoid wasps reveal larval host

(2010) RODOLPHE ROUGERIE et al.   MOLECULAR ECOLOGY

A comparison of the effectiveness of camera trapping and live trapping for sampling terrestrial small-mammal communities

(2010) Natasha De Bondi et al.   WILDLIFE RESEARCH

Second-generation environmental sequencing unmasks marine metazoan biodiversity

(2010) Vera G. Fonseca et al.   Nature Communications

Plant species loss decreases arthropod diversity and shifts trophic structure

(2009) Nick M. Haddad et al.   ECOLOGY LETTERS

Nucleic acids as viability markers for bacteria detection using molecular tools

(2009) Claire Cenciarini-Borde et al.   Future Microbiology

Pollination and Restoration

(2009) K. W. Dixon   SCIENCE

Restoration Ecology: Interventionist Approaches for Restoring and Maintaining Ecosystem Function in the Face of Rapid Environmental Change

(2008) Richard J. Hobbs et al.   Annual Review of Environment and Resources

DNA barcoding the floras of biodiversity hotspots

(2008) R. Lahaye et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA