jmzTab: A Java interface to the mzTab data standard

The jmzQuantML programming interface and validator for the mzQuantML data standard

(2014) Da Qi et al.   PROTEOMICS

The mzQuantML Data Standard for Mass Spectrometry–based Quantitative Studies in Proteomics

(2013) Mathias Walzer et al.   MOLECULAR & CELLULAR PROTEOMICS

Tools (Viewer, Library and Validator) that Facilitate Use of the Peptide and Protein Identification Standard Format, Termed mzIdentML

(2013) Fawaz Ghali et al.   MOLECULAR & CELLULAR PROTEOMICS

The mzIdentML Data Standard for Mass Spectrometry-Based Proteomics Results

(2012) Andrew R. Jones et al.   MOLECULAR & CELLULAR PROTEOMICS

The Proteomics Identifications (PRIDE) database and associated tools: status in 2013

(2012) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data

(2012) Kenneth Haug et al.   NUCLEIC ACIDS RESEARCH

jmzIdentML API: A Java interface to the mzIdentML standard for peptide and protein identification data

(2012) Florian Reisinger et al.   PROTEOMICS

MSnbase-an R/Bioconductor package for isobaric tagged mass spectrometry data visualization, processing and quantitation

(2011) Laurent Gatto et al.   BIOINFORMATICS

jTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions

(2011) Kenny Helsens et al.   JOURNAL OF PROTEOME RESEARCH

TraML—A Standard Format for Exchange of Selected Reaction Monitoring Transition Lists

(2011) Eric W. Deutsch et al.   MOLECULAR & CELLULAR PROTEOMICS

Lipid Data Analyzer: unattended identification and quantitation of lipids in LC-MS data

(2010) Jürgen Hartler et al.   BIOINFORMATICS

mzML—a Community Standard for Mass Spectrometry Data

(2010) Lennart Martens et al.   MOLECULAR & CELLULAR PROTEOMICS

jmzML, an open-source Java API for mzML, the PSI standard for MS data

(2010) Richard G. Côté et al.   PROTEOMICS