A posteriori quality control for the curation and reuse of public proteomics data

Quantitative Analysis of Protein Complex Constituents and Their Phosphorylation States on a LTQ-Orbitrap Instrument

(2010) Cédric Przybylski et al.   JOURNAL OF PROTEOME RESEARCH

Quantifying the Impact of Chimera MS/MS Spectra on Peptide Identification in Large-Scale Proteomics Studies

(2010) Stephane Houel et al.   JOURNAL OF PROTEOME RESEARCH

Decoding signalling networks by mass spectrometry-based proteomics

(2010) Chunaram Choudhary et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Pressure-assisted tryptic digestion using a syringe

(2010) Hyo-Jik Yang et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

MaRiMba: A Software Application for Spectral Library-Based MRM Transition List Assembly

(2009) Carly A. Sherwood et al.   JOURNAL OF PROTEOME RESEARCH

Repeatability and Reproducibility in Proteomic Identifications by Liquid Chromatography−Tandem Mass Spectrometry

(2009) David L. Tabb et al.   JOURNAL OF PROTEOME RESEARCH

Performance Metrics for Liquid Chromatography-Tandem Mass Spectrometry Systems in Proteomics Analyses

(2009) Paul A. Rudnick et al.   MOLECULAR & CELLULAR PROTEOMICS

NCBI Peptidome: a new public repository for mass spectrometry peptide identifications

(2009) Douglas J Slotta et al.   NATURE BIOTECHNOLOGY

A HUPO test sample study reveals common problems in mass spectrometry–based proteomics

(2009) Alexander W Bell et al.   NATURE METHODS

A guide to the Proteomics Identifications Database proteomics data repository

(2009) Juan Antonio Vizcaíno et al.   PROTEOMICS

Interferences and contaminants encountered in modern mass spectrometry

(2008) Bernd O. Keller et al.   ANALYTICA CHIMICA ACTA

Enhanced Detection of Low Abundance Human Plasma Proteins Using a Tandem IgY12-SuperMix Immunoaffinity Separation Strategy

(2008) Wei-Jun Qian et al.   MOLECULAR & CELLULAR PROTEOMICS

Targeted proteomic strategy for clinical biomarker discovery

(2008) Ralph Schiess et al.   Molecular Oncology

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Building consensus spectral libraries for peptide identification in proteomics

(2008) Henry Lam et al.   NATURE METHODS

Analysis of the experimental detection of central nervous system-related genes in human brain and cerebrospinal fluid datasets

(2008) Michael Mueller et al.   PROTEOMICS

PROTEOMICS: Proteomics Ponders Prime Time

(2008) R. F. Service   SCIENCE

Analyzing Large-Scale Proteomics Projects with Latent Semantic Indexing

(2007) Sebastian Klie et al.   JOURNAL OF PROTEOME RESEARCH