The challenge of the proteome dynamic range and its implications for in-depth proteomics

Proteomic Portrait of Human Breast Cancer Progression Identifies Novel Prognostic Markers

(2012) T. Geiger et al.   CANCER RESEARCH

Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome

(2012) C. Howald et al.   GENOME RESEARCH

Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins

(2012) Tamar Geiger et al.   MOLECULAR & CELLULAR PROTEOMICS

Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database

(2012) Christoph Schaab et al.   MOLECULAR & CELLULAR PROTEOMICS

Single-tube linear DNA amplification for genome-wide studies using a few thousand cells

(2012) Pattabhiraman Shankaranarayanan et al.   Nature Protocols

Proteomic screen reveals Fbw7 as a modulator of the NF-κB pathway

(2012) Azadeh Arabi et al.   Nature Communications

Human proteome analysis by using reversed phase monolithic silica capillary columns with enhanced sensitivity

(2011) Mio Iwasaki et al.   JOURNAL OF CHROMATOGRAPHY A

Defining the Boundaries and Characterizing the Landscape of Functional Genome Expression in Vascular Tissues of Populus using Shotgun Proteomics

(2011) Paul Abraham et al.   JOURNAL OF PROTEOME RESEARCH

Data Analysis Strategy for Maximizing High-Confidence Protein Identifications in Complex Proteomes Such as Human Tumor Secretomes and Human Serum

(2011) Huan Wang et al.   JOURNAL OF PROTEOME RESEARCH

Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation

(2011) Suman S. Thakur et al.   MOLECULAR & CELLULAR PROTEOMICS

A Quantitative Spatial Proteomics Analysis of Proteome Turnover in Human Cells

(2011) François-Michel Boisvert et al.   MOLECULAR & CELLULAR PROTEOMICS

Systematic and Quantitative Assessment of the Ubiquitin-Modified Proteome

(2011) Woong Kim et al.   MOLECULAR CELL

Deep proteome and transcriptome mapping of a human cancer cell line

(2011) N. Nagaraj et al.   Molecular Systems Biology

The quantitative proteome of a human cell line

(2011) M. Beck et al.   Molecular Systems Biology

Global quantification of mammalian gene expression control

(2011) Björn Schwanhäusser et al.   NATURE

Quantitative Proteomics Reveals Subset-Specific Viral Recognition in Dendritic Cells

(2010) Christian A. Luber et al.   IMMUNITY

Defining the transcriptome and proteome in three functionally different human cell lines

(2010) Emma Lundberg et al.   Molecular Systems Biology

Equalizer technology - Equal rights for disparate beads

(2010) Eva-Maria Keidel et al.   PROTEOMICS

Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome

(2009) Jacek R. Wiśniewski et al.   JOURNAL OF PROTEOME RESEARCH

Protein Identification False Discovery Rates for Very Large Proteomics Data Sets Generated by Tandem Mass Spectrometry

(2009) Lukas Reiter et al.   MOLECULAR & CELLULAR PROTEOMICS

The art of observing rare protein species in proteomes with peptide ligand libraries

(2009) Egisto Boschetti et al.   PROTEOMICS