Dead-end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility
Published 2013 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Dead-end elimination with perturbations (DEEPer): A provable protein design algorithm with continuous sidechain and backbone flexibility
Authors
Keywords
-
Journal
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
Volume 81, Issue 1, Pages 18-39
Publisher
Wiley
Online
2013-04-12
DOI
10.1002/prot.24150
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Role of Local Backrub Motions in Evolved and Designed Mutations
- (2012) Daniel A. Keedy et al. PLoS Computational Biology
- Computational Design of a PDZ Domain Peptide Inhibitor that Rescues CFTR Activity
- (2012) Kyle E. Roberts et al. PLoS Computational Biology
- Protein Design Using Continuous Rotamers
- (2012) Pablo Gainza et al. PLoS Computational Biology
- Protein loop closure using orientational restraints from NMR data
- (2011) Chittaranjan Tripathy et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- A New Generation of Crystallographic Validation Tools for the Protein Data Bank
- (2011) Randy J. Read et al. STRUCTURE
- Computational Design and Experimental Testing of the Fastest-Folding β-Sheet Protein
- (2010) Stefano Piana et al. JOURNAL OF MOLECULAR BIOLOGY
- Predicting resistance mutations using protein design algorithms
- (2010) K. M. Frey et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Accounting for conformational entropy in predicting binding free energies of protein-protein interactions
- (2010) Hetunandan Kamisetty et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- Computational structure-based redesign of enzyme activity
- (2009) C.-Y. Chen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- KING (Kinemage, Next Generation): A versatile interactive molecular and scientific visualization program
- (2009) Vincent B. Chen et al. PROTEIN SCIENCE
- Macromolecular Modeling with Rosetta
- (2008) Rhiju Das et al. Annual Review of Biochemistry
- Algorithm for backrub motions in protein design
- (2008) I. Georgiev et al. BIOINFORMATICS
- The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles
- (2008) Ivelin Georgiev et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Backrub-Like Backbone Simulation Recapitulates Natural Protein Conformational Variability and Improves Mutant Side-Chain Prediction
- (2008) Colin A. Smith et al. JOURNAL OF MOLECULAR BIOLOGY
- Matt: Local Flexibility Aids Protein Multiple Structure Alignment
- (2008) Matthew Menke et al. PLoS Computational Biology
- The crystal structures of the psychrophilic subtilisin S41 and the mesophilic subtilisin Sph reveal the same calcium-loaded state
- (2008) Orna Almog et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- An improved pairwise decomposable finite-difference Poisson–Boltzmann method for computational protein design
- (2007) Christina L. Vizcarra et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationAdd your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload Now