Protein loop closure using orientational restraints from NMR data

Protein side-chain resonance assignment and NOE assignment using RDC-defined backbones without TOCSY data

(2011) Jianyang Zeng et al.   JOURNAL OF BIOMOLECULAR NMR

SHIFTX2: significantly improved protein chemical shift prediction

(2011) Beomsoo Han et al.   JOURNAL OF BIOMOLECULAR NMR

A graphical method for analyzing distance restraints using residual dipolar couplings for structure determination of symmetric protein homo-oligomers

(2011) Jeffrey W. Martin et al.   PROTEIN SCIENCE

In Silico Elucidation of the Recognition Dynamics of Ubiquitin

(2011) Dong Long et al.   PLoS Computational Biology

Residual dipolar couplings: are multiple independent alignments always possible?

(2010) Victoria A. Higman et al.   JOURNAL OF BIOMOLECULAR NMR

Predicting resistance mutations using protein design algorithms

(2010) K. M. Frey et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Simultaneous modeling of multiple loops in proteins

(2010) Dror Rosenbach et al.   PROTEIN SCIENCE

Protein loop modeling by using fragment assembly and analytical loop closure

(2010) Julian Lee et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

NMR Structure Determination for Larger Proteins Using Backbone-Only Data

(2010) S. Raman et al.   SCIENCE

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Protein Conformational Flexibility from Structure-Free Analysis of NMR Dipolar Couplings: Quantitative and Absolute Determination of Backbone Motion in Ubiquitin

(2009) Loïc Salmon et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent

(2009) Kamal Al Nasr et al.   International Journal of Data Mining and Bioinformatics

High-resolution protein structure determination starting with a global fold calculated from exact solutions to the RDC equations

(2009) Jianyang Zeng et al.   JOURNAL OF BIOMOLECULAR NMR

TALOS+: a hybrid method for predicting protein backbone torsion angles from NMR chemical shifts

(2009) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

Toward a Unified Representation of Protein Structural Dynamics in Solution

(2009) Phineus R. L. Markwick et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling

(2009) Daniel J Mandell et al.   NATURE METHODS

Structure of the measles virus hemagglutinin bound to the CD46 receptor

(2009) César Santiago et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Computational structure-based redesign of enzyme activity

(2009) C.-Y. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conformational selection and induced fit mechanism underlie specificity in noncovalent interactions with ubiquitin

(2009) T. Wlodarski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated NMR assignment and protein structure determination using sparse dipolar coupling constraints

(2009) Bruce R. Donald et al.   PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY

A Self-Organizing Algorithm for Modeling Protein Loops

(2009) Pu Liu et al.   PLoS Computational Biology

A structural basis for the allosteric regulation of non-hydrolysing UDP-GlcNAc 2-epimerases

(2008) Lucas M Velloso et al.   EMBO REPORTS

De novo protein structure generation from incomplete chemical shift assignments

(2008) Yang Shen et al.   JOURNAL OF BIOMOLECULAR NMR

The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles

(2008) Ivelin Georgiev et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

NMR: prediction of molecular alignment from structure using the PALES software

(2008) Markus Zweckstetter   Nature Protocols

Consistent blind protein structure generation from NMR chemical shift data

(2008) Y. Shen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Toward better refinement of comparative models: Predicting loops in inexact environments

(2008) Benjamin D. Sellers et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Recognition Dynamics Up to Microseconds Revealed from an RDC-Derived Ubiquitin Ensemble in Solution

(2008) O. F. Lange et al.   SCIENCE