Conserved evolutionary units in the heme-copper oxidase superfamily revealed by novel homologous protein families

Identification of Genes Involved in Neisseria meningitidis Colonization

(2013) Anne Jamet et al.   INFECTION AND IMMUNITY

A Novel Protein Protects Bacterial Iron-Dependent Metabolism from Nitric Oxide

(2013) A. M. Stern et al.   JOURNAL OF BACTERIOLOGY

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Sand-Fly Saliva-Leishmania-Man: The Trigger Trio

(2013) Fabiano Oliveira et al.   Frontiers in Immunology

INVERTED TOPOLOGIES IN MEMBRANE PROTEINS: A MINI-REVIEW

(2013) Amanda M Duran et al.   Computational and Structural Biotechnology Journal

The RCSB Protein Data Bank: new resources for research and education

(2012) Peter W. Rose et al.   NUCLEIC ACIDS RESEARCH

CDD: conserved domains and protein three-dimensional structure

(2012) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

The NorR Regulon Is Critical for Vibrio cholerae Resistance to Nitric Oxide and Sustained Colonization of the Intestines

(2012) A. M. Stern et al.   mBio

Heme Uptake by Leishmania amazonensis Is Mediated by the Transmembrane Protein LHR1

(2012) Chau Huynh et al.   PLoS Pathogens

The superfamily of heme–copper oxygen reductases: Types and evolutionary considerations

(2011) Filipa L. Sousa et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The Evolution of Multimeric Protein Assemblages

(2011) M. Lynch   MOLECULAR BIOLOGY AND EVOLUTION

A new ATP-binding cassette protein is involved in intracellular haem trafficking in Leishmania

(2011) Jenny Campos-Salinas et al.   MOLECULAR MICROBIOLOGY

A Bioinformatics Classifier and Database for Heme-Copper Oxygen Reductases

(2011) Filipa L. Sousa et al.   PLoS One

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Overcoming the Heme Paradox: Heme Toxicity and Tolerance in Bacterial Pathogens

(2010) L. L. Anzaldi et al.   INFECTION AND IMMUNITY

Devonian rise in atmospheric oxygen correlated to the radiations of terrestrial plants and large predatory fish

(2010) T. W. Dahl et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Common structural features of mapeg-a widespread superfamily of membrane associated proteins with highly divergent functions in eicosanoid and glutathione metabolism

(2010) Per-Johan Jakobsson et al.   PROTEIN SCIENCE

Catalyzing NO to N2O in the Nitrogen Cycle

(2010) P. Moenne-Loccoz et al.   SCIENCE

Structural Basis of Biological N2O Generation by Bacterial Nitric Oxide Reductase

(2010) T. Hino et al.   SCIENCE

Evolution of the haem synthetic pathway in kinetoplastid flagellates: An essential pathway that is not essential after all?

(2009) Luděk Kořený et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

HorA web server to infer homology between proteins using sequence and structural similarity

(2009) B.-H. Kim et al.   NUCLEIC ACIDS RESEARCH

Evolution of the haem copper oxidases superfamily: a rooting tale

(2009) Simonetta Gribaldo et al.   TRENDS IN BIOCHEMICAL SCIENCES

Catalysis within the lipid bilayer—structure and mechanism of the MAPEG family of integral membrane proteins

(2008) D MARTINEZMOLINA et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Diversity and distribution of hemerythrin-like proteins in prokaryotes

(2008) Christopher E. French et al.   FEMS MICROBIOLOGY LETTERS

Widespread Distribution in Pathogenic Bacteria of Di-Iron Proteins That Repair Oxidative and Nitrosative Damage to Iron-Sulfur Centers

(2008) T. W. Overton et al.   JOURNAL OF BACTERIOLOGY

Transcriptional Map of Respiratory Versatility in the Hyperthermophilic CrenarchaeonPyrobaculum aerophilum

(2008) Aaron E. Cozen et al.   JOURNAL OF BACTERIOLOGY

Discrimination between Distant Homologs and Structural Analogs: Lessons from Manually Constructed, Reliable Data Sets

(2008) Hua Cheng et al.   JOURNAL OF MOLECULAR BIOLOGY

The Multiple Evolutionary Histories of Dioxygen Reductases: Implications for the Origin and Evolution of Aerobic Respiration

(2008) C. Brochier-Armanet et al.   MOLECULAR BIOLOGY AND EVOLUTION

Assembly reflects evolution of protein complexes

(2008) Emmanuel D. Levy et al.   NATURE

PROMALS3D: a tool for multiple protein sequence and structure alignments

(2008) Jimin Pei et al.   NUCLEIC ACIDS RESEARCH

Two-phase increase in the maximum size of life over 3.5 billion years reflects biological innovation and environmental opportunity

(2008) J. L. Payne et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Was nitric oxide the first deep electron sink?

(2008) Anne-Lise Ducluzeau et al.   TRENDS IN BIOCHEMICAL SCIENCES

Leishmania spp.: Delta-aminolevulinate-inducible neogenesis of porphyria by genetic complementation of incomplete heme biosynthesis pathway

(2007) Sujoy Dutta et al.   EXPERIMENTAL PARASITOLOGY

Common occurrence of internal repeat symmetry in membrane proteins

(2007) Sungwon Choi et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS