Museum samples reveal rapid evolution by wild honey bees exposed to a novel parasite

Changes in Honey Bee (Hymenoptera: Apidae) Colony Swarming and Survival Pre- and Postarrival of Varroa destructor (Mesostigmata: Varroidae) in Louisiana

(2015) José D. Villa et al.   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Finding the missing honey bee genes: lessons learned from a genome upgrade

(2014) Christine G Elsik et al.   BMC GENOMICS

A worldwide survey of genome sequence variation provides insight into the evolutionary history of the honeybee Apis mellifera

(2014) Andreas Wallberg et al.   NATURE GENETICS

Sequencing Degraded DNA from Non-Destructively Sampled Museum Specimens for RAD-Tagging and Low-Coverage Shotgun Phylogenetics

(2014) Mandy Man-Ying Tin et al.   PLoS One

Population genomics of the honey bee reveals strong signatures of positive selection on worker traits

(2014) B. A. Harpur et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying Population Genetic Differentiation from Next-Generation Sequencing Data

(2013) Matteo Fumagalli et al.   GENETICS

Estimating Individual Admixture Proportions from Next Generation Sequencing Data

(2013) Line Skotte et al.   GENETICS

The Genomic Signal of Partial Sweeps in Mimulus guttatus

(2013) John K. Kelly et al.   Genome Biology and Evolution

Estimating inbreeding coefficients from NGS data: Impact on genotype calling and allele frequency estimation

(2013) Filipe G. Vieira et al.   GENOME RESEARCH

Observation of Varroa destructor behavior in capped worker brood of Africanized honey bees

(2012) Rafael A. Calderón et al.   EXPERIMENTAL AND APPLIED ACAROLOGY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Fine-Scale Linkage Mapping Reveals a Small Set of Candidate Genes Influencing Honey Bee Grooming Behavior in Response to Varroa Mites

(2012) Miguel E. Arechavaleta-Velasco et al.   PLoS One

High-Resolution Linkage Analyses to Identify Genes That Influence Varroa Sensitive Hygiene Behavior in Honey Bees

(2012) Jennifer M. Tsuruda et al.   PLoS One

Global Honey Bee Viral Landscape Altered by a Parasitic Mite

(2012) S. J. Martin et al.   SCIENCE

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Estimation of allele frequency and association mapping using next-generation sequencing data

(2011) Su Kim et al.   BMC BIOINFORMATICS

Natural history collections as sources of long-term datasets

(2011) Adrian M. Lister   TRENDS IN ECOLOGY & EVOLUTION

Three QTL in the honey bee Apis mellifera L. suppress reproduction of the parasitic mite Varroa destructor

(2011) Dieter Behrens et al.   Ecology and Evolution

MSMS: a coalescent simulation program including recombination, demographic structure and selection at a single locus

(2010) Gregory Ewing et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads

(2010) G. Lunter et al.   GENOME RESEARCH

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Adaptation – not by sweeps alone

(2010) Jonathan K. Pritchard et al.   NATURE REVIEWS GENETICS

An Emerging Disease Causes Regional Population Collapse of a Common North American Bat Species

(2010) W. F. Frick et al.   SCIENCE

Approximate Bayesian Computation (ABC) in practice

(2010) Katalin Csilléry et al.   TRENDS IN ECOLOGY & EVOLUTION

Dopamine Receptor Activation By Honey Bee Queen Pheromone

(2009) Kyle T. Beggs et al.   CURRENT BIOLOGY

A historical review of managed honey bee populations in Europe and the United States and the factors that may affect them

(2009) Dennis vanEngelsdorp et al.   JOURNAL OF INVERTEBRATE PATHOLOGY

The ecology and impact of chytridiomycosis: an emerging disease of amphibians

(2009) A. Marm Kilpatrick et al.   TRENDS IN ECOLOGY & EVOLUTION

DNA damage in preserved specimens and tissue samples: a molecular assessment

(2008) Juergen Zimmermann et al.   Frontiers in Zoology