Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis

Exploration and retrieval of whole-metagenome sequencing samples

(2014) Sohan Seth et al.   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Comparative Genomic Hybridization Identifies Virulence Differences in Streptococcus suis

(2014) Han Zheng et al.   PLoS One

Bacterial Phylogenetic Reconstruction from Whole Genomes Is Robust to Recombination but Demographic Inference Is Not

(2014) Jessica Hedge et al.   mBio

Postgenomic analysis of bacterial pathogens repertoire reveals genome reduction rather than virulence factors

(2013) V. Merhej et al.   Briefings in Functional Genomics

The Evolutionary Path to Extraintestinal Pathogenic, Drug-Resistant Escherichia coli Is Marked by Drastic Reduction in Detectable Recombination within the Core Genome

(2013) Alan McNally et al.   Genome Biology and Evolution

Minimum Core Genome Sequence Typing of Bacterial Pathogens: a Unified Approach for Clinical and Public Health Microbiology

(2013) C. Chen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software

(2013) L. Cheng et al.   MOLECULAR BIOLOGY AND EVOLUTION

Livestock Origin for a Human Pandemic Clone of Community-Associated Methicillin-Resistant Staphylococcus aureus

(2013) L. E. Spoor et al.   mBio

Virulence factors involved in the pathogenesis of the infection caused by the swine pathogen and zoonotic agent Streptococcus suis

(2012) Nahuel Fittipaldi et al.   Future Microbiology

Antivirulence Genes: Insights into Pathogen Evolution through Gene Loss

(2012) Kimberly A. Bliven et al.   INFECTION AND IMMUNITY

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus

(2012) Santiago Castillo-Ramírez et al.   GENOME BIOLOGY

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

Optimal enzymes for amplifying sequencing libraries

(2011) Michael A Quail et al.   NATURE METHODS

Detection of recombination events in bacterial genomes from large population samples

(2011) Pekka Marttinen et al.   NUCLEIC ACIDS RESEARCH

Slaughterhouse Pigs Are a Major Reservoir of Streptococcus suis Serotype 2 Capable of Causing Human Infection in Southern Vietnam

(2011) Ngo Thi Hoa et al.   PLoS One

Risk Factors of Streptococcus suis Infection in Vietnam. A Case-Control Study

(2011) Dang Trung Nghia Ho et al.   PLoS One

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

IgA1 protease contributes to the virulence of Streptococcus suis

(2010) Anding Zhang et al.   VETERINARY MICROBIOLOGY

Streptococcus suis:An Emerging Human Pathogen

(2009) Heiman F. L. Wertheim et al.   CLINICAL INFECTIOUS DISEASES

Differential Recognition and Hydrolysis of Host Carbohydrate Antigens byStreptococcus pneumoniaeFamily 98 Glycoside Hydrolases

(2009) Melanie A. Higgins et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Rapid Evolution of Virulence and Drug Resistance in the Emerging Zoonotic Pathogen Streptococcus suis

(2009) Matthew T. G. Holden et al.   PLoS One

Hyper-Recombination, Diversity, and Antibiotic Resistance in Pneumococcus

(2009) W. P. Hanage et al.   SCIENCE

Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach

(2009) Jing Tang et al.   PLoS Computational Biology

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

(2008) Jukka Corander et al.   BMC BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

A large genome center's improvements to the Illumina sequencing system

(2008) Michael A Quail et al.   NATURE METHODS

SalK/SalR, a Two-Component Signal Transduction System, Is Essential for Full Virulence of Highly Invasive Streptococcus suis Serotype 2

(2008) Ming Li et al.   PLoS One

Isolation and identification of a bacteriophage capable of infecting Streptococcus suis type 2 strains

(2008) Y.L. Ma et al.   VETERINARY MICROBIOLOGY