Minimum Core Genome Sequence Typing of Bacterial Pathogens: a Unified Approach for Clinical and Public Health Microbiology

Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory

(2012) W. M. Dunne et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

Comparative genomic analysis of Streptococcus suis reveals significant genomic diversity among different serotypes

(2011) Anding Zhang et al.   BMC GENOMICS

Distribution of serogroups and sequence types in disease-associated and carrier strains of Neisseria meningitidis isolated in China between 2003 and 2008

(2011) H. ZHOU et al.   EPIDEMIOLOGY AND INFECTION

Complete Genome Sequence of Streptococcus suis Serotype 14 Strain JS14

(2011) P. Hu et al.   JOURNAL OF BACTERIOLOGY

Evidence for several waves of global transmission in the seventh cholera pandemic

(2011) Ankur Mutreja et al.   NATURE

Open-Source Genomic Analysis of Shiga-Toxin–ProducingE. coliO104:H4

(2011) Holger Rohde et al.   NEW ENGLAND JOURNAL OF MEDICINE

Identification of Genes and Genomic Islands Correlated with High Pathogenicity in Streptococcus suis Using Whole Genome Tilling Microarrays

(2011) Xiao Zheng et al.   PLoS One

Comparative Genomics Study of Multi-Drug-Resistance Mechanisms in the Antibiotic-Resistant Streptococcus suis R61 Strain

(2011) Pan Hu et al.   PLoS One

Rates of Mutation and Host Transmission for an Escherichia coli Clone over 3 Years

(2011) Peter R. Reeves et al.   PLoS One

Rapid Pneumococcal Evolution in Response to Clinical Interventions

(2011) N. J. Croucher et al.   SCIENCE

Recombination and Population Structure in Salmonella enterica

(2011) Xavier Didelot et al.   PLoS Genetics

High-throughput sequencing and clinical microbiology: progress, opportunities and challenges

(2010) Mark J Pallen et al.   CURRENT OPINION IN MICROBIOLOGY

Streptococcus suis: a new emerging or an old neglected zoonotic pathogen?

(2010) Marcelo Gottschalk et al.   Future Microbiology

Comparative genomics of the genus Bifidobacterium

(2010) F. Bottacini et al.   MICROBIOLOGY-SGM

Yersinia pestis genome sequencing identifies patterns of global phylogenetic diversity

(2010) Giovanna Morelli et al.   NATURE GENETICS

Evolution of MRSA During Hospital Transmission and Intercontinental Spread

(2010) S. R. Harris et al.   SCIENCE

Uncovering newly emerging variants of Streptococcus suis, an important zoonotic agent

(2010) Youjun Feng et al.   TRENDS IN MICROBIOLOGY

SNP detection for massively parallel whole-genome resequencing

(2009) R. Li et al.   GENOME RESEARCH

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Rapid Evolution of Virulence and Drug Resistance in the Emerging Zoonotic Pathogen Streptococcus suis

(2009) Matthew T. G. Holden et al.   PLoS One

Streptococcus suis Meningitis in Adults in Vietnam

(2008) N. Thi Hoang Mai et al.   CLINICAL INFECTIOUS DISEASES

Clinical, Experimental, and Genomic Differences between Intermediately Pathogenic, Highly Pathogenic, and EpidemicStreptococcus suis

(2008) Changyun Ye et al.   JOURNAL OF INFECTIOUS DISEASES

A Recalibrated Molecular Clock and Independent Origins for the Cholera Pandemic Clones

(2008) Lu Feng et al.   PLoS One

Variation in virulence among clades of Escherichia coli O157:H7 associated with disease outbreaks

(2008) S. D. Manning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA