Transcriptomic analysis of avian digits reveals conserved and derived digit identities in birds

Densely Interconnected Transcriptional Circuits Control Cell States in Human Hematopoiesis

(2011) Noa Novershtern et al.   CELL

Identity of the avian wing digits: Problems resolved and unsolved

(2011) Rebecca L. Young et al.   DEVELOPMENTAL DYNAMICS

Why ontogenetic homology criteria can be misleading: lessons from digit identity transformations

(2011) Rebecca L. Young et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Embryological Evidence Identifies Wing Digits in Birds as Digits 1, 2, and 3

(2011) K. Tamura et al.   SCIENCE

Anterior shift in gene expression precedes anteriormost digit formation in amniote limbs

(2010) Asaka Uejima et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

The transcriptional diversity of 25 Drosophila cell lines

(2010) L. Cherbas et al.   GENOME RESEARCH

Hox expression in the American alligator and evolution of archosaurian axial patterning

(2010) Jennifer H. Mansfield et al.   JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

A scaling normalization method for differential expression analysis of RNA-seq data

(2010) Mark D Robinson et al.   GENOME BIOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

LIM homeobox transcription factors integrate signaling events that control three-dimensional limb patterning and growth

(2009) I. Tzchori et al.   DEVELOPMENT

Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes

(2009) Antonio Abellán et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Modeling Hox gene regulation in digits: reverse collinearity and the molecular origin of thumbness

(2008) T. Montavon et al.   GENES & DEVELOPMENT

The evolution of cell types in animals: emerging principles from molecular studies

(2008) Detlev Arendt   NATURE REVIEWS GENETICS

The Evolution of HoxD-11 Expression in the Bird Wing: Insights from Alligator mississippiensis

(2008) Alexander O. Vargas et al.   PLoS One

Unique SMAD1/5/8 activity at the phalanx-forming region determines digit identity

(2008) T. Suzuki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA